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chore: bump versions across modules and update dependencies (#296)

* chore: bump versions across modules and update dependencies

- Updated versions for NATS modules, including core, JetStream, KV, object store, services, and transport.
- Upgraded `@types/node`, `shx`, `typescript`, and `js-sha256` dependencies.
- Changed transport node to build the workspace and then run the tests
- Bump deno and node versions
- Updated internal versions, @nats-io/jwt, as well @std/* dependencies
- Bump versions to `3.1.0` across modules and synchronized dependencies to align with the stable release.

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Signed-off-by: Alberto Ricart <alberto@synadia.com>

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