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Ran 09 Jul 2025 09:27AM UTC

Files 871

Run time 23s

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Committed 09 Jul 2025 09:24AM UTC coverage: 85.733% (+0.009%) from 85.724%

Job # 16165554005.1

Build Type

push

github

Committed by

web-flow

Commit Message

Feat(Pacbio) Only run post-processing if all cells are ready (#4479)(minor)

## Description
This PR changes the starting logic for the post-procesessing  of Pacbio SMRT cells. Before post-processing each SMRT cell we now also check that all other cells in the same run directory also are completed. 

This is only applies to the `post_process_all_runs command`. One can still run `post_process_run` to post-process a SMRT cell regardless of the others in the run

### Changed

- The `post_process_all_runs` now only post-pocesses SMRT cells if the entire run is completed

Run Details

27726 of 32340 relevant lines covered (85.73%)

0.86 hits per line

Clinical-Genomics / cg / 16165554005 / 1
86%
master: 86%

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Clinical-Genomics / cg / 16165554005 / 1 86% master: 86%

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Markdown

Textile

RDoc

HTML

Rst

Source Files on job 16165554005.1

Clinical-Genomics / cg / 16165554005 / 1
86%
master: 86%

README BADGES
x