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Extend pre-commit hooks with pretty-format-toml (#2399)

In this PR, pre-commit hook is extended with pretty-format-toml. In
addition, the version of other packages in pre-commit hook is updated.

4701 of 9510 branches covered (49.43%)

Branch coverage included in aggregate %.

17654 of 21437 relevant lines covered (82.35%)

19935.91 hits per line

Source Files on job 14161336023.1