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Lightning harness extension (#25)

* Update scheduled sampling schedule usage

* Update Lightning module and add harness

* Fix lr scheduler issue in lightning harness

* Remove incorrect index in Lightning module step

* Update gitignore for some lightning files

* Add data module for Lightning

* Switch scheduled sampling steps to epochs

* Misc updates for job chaining in lightning

* Add eval script for lightning checkpoints

* Add loss plot for Lightning outputs

* Add version filter to loss script

* Reorganize lightning data module

* Fix a comparison in lightning harness

* Update an eval script

* Update checkpoint usage in lightning harness

* Update argument names in scheduled sampling harness

* Update tests for scheduled sampling

* Update pytest for Lightning loderunner

* Fix tensor shapes in a pytest

* Change default out_vars in Lightning pytest

* Restore some logging checks to Lightning module

* Cleanup some helper scripts

* Codestyle cleanup in some helper scripts

* More codestyle cleanup in datasets

* Formatting cleanup for some evaluation scripts

* Reformat scheduled sampling test

* Reformat lightning data module

* More code format cleanup

* Code reformat scheduled_sampling.py

* Update yoke_install_test_lint.yml

Signed-off-by: dschodt-lanl <dschodt@lanl.gov>

* Remove src/yoke from yoke_install_test_lint.yml

Signed-off-by: dschodt-lanl <dschodt@lanl.gov>

* Update code for TensorBoard logging

* Modify logging check in Lightning_LodeRunner

* Update a lightning module test

* Update lightning module for pytest

* Add another check for lightning logging

* Turn off logging in a pytest

* Add linting for scheduled sampling file

* Reformat scheduled sampling file

* Cleanup slurm files in new harness

* Lint helper utilities

* Remove some eval scripts from version control

* Fix a logging check in lightning module

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Signed-off-by: dschodt-lanl <dschodt@lanl.gov>

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