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Ran 22 Mar 2025 07:27AM UTC

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Committed 21 Mar 2025 05:40AM UTC coverage: 98.913% (+0.2%) from 98.731%

Job # 14006417603.4

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push

github

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web-flow

Commit Message

ENH: provide piqtree_nj and nj_tree option for positive branch lengths (#165)

* ENH: parameter to restrict negative value of branch length

* TST: allow_negative correctly control the behavior of branch length in nj_tree

* ENH: add parameter allow_negative in piqtree_nj app

* MAINT: fix double return error in merge

* MAINT: ruff formatting

* TST: Use full fasta file for checking `nj_tree` negative branch lengths

* MAINT: move from `ArrayAlignment` to `Alignment` in preparation for `new_type` default

* MAINT: simplify logic for negative branch lengths

* MAINT: Sort fixtures by number of taxa

* MAINT: Remove unused test data file

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Co-authored-by: Robert McArthur <robert.mcarthur@anu.edu.au>

Run Details

1183 of 1196 relevant lines covered (98.91%)

0.99 hits per line

rmcar17 / piqtree / 14006417603 / 4
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