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Ran 13 Feb 2025 10:03AM UTC

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Committed 13 Feb 2025 10:02AM UTC coverage: 24.24% (-0.2%) from 24.431%

Subproject # baseline – 13305127832.1

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push

github

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web-flow

Commit Message

Add a SONATA circuit for the ringtest (#49)

## Context
As per discussion in
https://github.com/openbraininstitute/neurodamus/issues/11, this PR adds
the ringtest circuit which creates 2 rings of simple `BallStick` cells.
```
Nodes:
- RingA: 3 cells, 2 sections/cell, 2 segments/section
- RingB: 2 cells, 2 sections/cell, 2 segments/section
Edges:
- RingA: 0 -> 1 -> 2 ->0
- RingB: 0 -> 1 -> 0
- RingA: 0 -> RingB: 0
```
## Scope

1. In the test folder: adds a SONATA version of the ring test circuit
including 2 nodes files + 3 edges files, the relevant SONATA config
files, reference cell dump output json files.
2. In neurodamus/utils, a new function `dump_cellstate` to dump
cell/section/segments/netcons/synapse attributes from the NEURON context

## Testing
1. `test/integration/test_ringcells.py` can be run with `tox -e
integration`
     `test_dump_RingB_2cells`: dump 1 population with 2 cells
     `test_dump_RingA_RingB`: dump 2 populations 

## Review
* [x] PR description is complete
* [x] Coding style (imports, function length, New functions, classes or
files) are good
* [x] Unit/Scientific test added
* [ ] Updated Readme, in-code, developer documentation

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