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Change some more internal usages of ConjunctiveGraph to Dataset to silence warnings (#2867)

* Change Hextuples pareser and NQuads parser to use an internal Dataset() instance to parse into, instead of using ConjunctiveGraph.
Add better handling of parsing into the correct default-graph for destination ConjuctiveGraphs or Datasets that already have their own default_graph defined.

* Fix JSON-LD serializing when the source is a Dataset and triples are in the named graph with name DATASET_DEFAULT_GRAPH_ID

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Co-authored-by: Nicholas Car <nick@kurrawong.net>

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