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test: fix several more tests after the luatest bump

The test gh_10088 was committed in parallel with the luatest bump and
thus slipped from the post-bump tests fixup in commit cfd4bf4685de
("test: adapt tests to the new luatest version"). Fix it now.

Also tests gh_6539 and gh_7231 queried `box.cfg.log` wrongly, but this
didn't make them fail, they just stopped testing what they were supposed
to. Fix them as well

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