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Ran 20 Apr 2024 05:11AM UTC

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Committed 18 Apr 2024 01:39PM UTC coverage: 88.982%. First build

Job # 8762635832.1

Build Type

push

github

Committed by

web-flow

Commit Message

Support unmyelinated axons in morphometrics (#796)

* Added unmyelinated axon argument in launch_morphometrics_computation

* Added unmyelinated axon suffix (_seg-uaxon)

* Add detailed description of -u flag

* Ignore u-axon preds as inputs for batch morphometrics

* Extract mask loading into a fn and load uaxon when necessary

* Support uaxon in morphometrics and validate input arguments

* Save index image on top of uaxon mask

* Use different default morphometric filename in unmyelinated mode

* PEP8 lint and support batch uaxon morphometrics

* Warn user that -b is ignored in unmyelinated mode

* Add tests for morphometrics unmyelinated mode

* Document morphometrics -u flag

* Fix morphometrics test setup method

Coverage Stats

1163 of 1307 relevant lines covered (88.98%)

2.67 hits per line

axondeepseg / axondeepseg / 8762635832 / 1
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master: 79%

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master: 79%

README BADGES
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