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Ran 28 Mar 2024 05:22PM UTC

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Committed 28 Mar 2024 05:17PM UTC coverage: 96.022% (-0.1%) from 96.17%

Job # 8471129701.1

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push

github

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web-flow

Commit Message

Add support for downloading plant species with pyEnsembl (#305)

This commit introduces the ability to download plant species data using pyEnsembl. We've added the 'is_plant' parameter to the Species class, and registered two new species: Arabidopsis Thaliana and Oryza Sativa (Rice).

We've also added the ENSEMBL_PLANTS_FTP_SERVER URL, and the PLANTS_GTF_SUBDIR_TEMPLATE and PLANTS_FASTA_SUBDIR_TEMPLATE for creating the download links. The code checks if the species is a plant to determine which templates to use.

Run Details

1907 of 1986 relevant lines covered (96.02%)

0.96 hits per line

openvax / pyensembl / 8471129701 / 1
83%
master: 83%

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openvax / pyensembl / 8471129701 / 1 83% master: 83%

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Markdown

Textile

RDoc

HTML

Rst

Source Files on job 8471129701.1

openvax / pyensembl / 8471129701 / 1
83%
master: 83%

README BADGES
x