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Committed 06 Feb 2024 05:19PM UTC coverage: 0.0%. Remained the same

Job # 7803572146.1

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push

github

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web-flow

Commit Message

Added total_biological_reads_r1r2. (#177)

* Added total_biological_reads_r1r2.

Quality_filtered_reads_r1r2 renamed total_biological_reads_r1r2 as the
results from fastp do not appear to take into account any filtering.
A new method to produce accurate quality_filtered_reads_r1r2 implemented
by counting the number of lines in each filtered fastq file and
performing the appropriate math on it.

* Updated test

* Updated quality_filtered_reads_r1r2 impl.

Impl now uses skbio.io.read() to count the number of sequences in a
file.

* Add scikit-bio as a dependency.

* flake8

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