TuringLang / DynamicPPL.jl / 6128171735 / 1
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Fix for `generated_quantities` (#534)

* added method for extracting the child lens from a varname subsumed by
another varname

* added nested_getindex and nested_setindex! for VarInfo

* added ConstructionBase.setproperties implementation for `Cholesky`

* fixed minor formatting issue

* added `supports_varname_indexing` for chains and use this in generated_quantities

* use a private method rather than overloading getindex for Chains

* removed getindex overloads in nested_index testing

* moved generated_quantities tests to test/model.jl

* Apply suggestions from code review

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* will now also correctly set variables to be resampled, etc.

* Update test/model.jl

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* Update src/varinfo.jl

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* added Compat as a test dep so we can methods such as stack

* improved overload of ConstructionBase.setproperties

* Apply suggestions from code review

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* added docstring to remove_parent_lens

* removed methods which are not useful for the purpose of this PR

* noticed we're incorrectly using chain rather than chain_params in generated_quantities

* Update ext/DynamicPPLMCMCChainsExt.jl

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* fixed doctests

* added Requires.jl

* Update src/DynamicPPL.jl

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

* bump patch version

* Update src/DynamicPPL.jl

Co-authored-by: David Widmann <devmotion@users.noreply.github.com>

* moved new generated_quantities functionality into setval_and_resample!
so we can make use of this also for Turing.predict, etc.

* Apply suggestions... (continued)

2425 of 2982 relevant lines covered (81.32%)

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Source Files on job 6128171735.1