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Ran 27 Sep 2022 12:26AM UTC

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Committed 27 Sep 2022 12:08AM UTC coverage: 94.581% (-0.06%) from 94.645%

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push

travis-ci-com

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web-flow

Commit Message

Remove cell table batching functionality (#726)

* Remove batching from generate_cell_table

* First pass at fixing tests

* Need to change looping over FOVs as new zip method doesn't play nicely with filenames

* Remove batch_size from call in 1_Segment_Image_Data

* Remove batch_size to generate_cell_table call in notebooks_test

* Condense per-FOV loop in create_marker_count_matrices and ensure generate_cell_table is tested on different-sized FOVs

* Update documentation for create_marker_count_matrices

* Put back nuclear_counts handling in generate_cell_table

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angelolab / ark-analysis / 6347 / 1
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angelolab / ark-analysis / 6347 / 1 95% master: 94%

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angelolab / ark-analysis / 6347 / 1
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master: 94%

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