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Ran 05 Aug 2022 04:35PM UTC

Files 18

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Committed 05 Aug 2022 04:35PM UTC coverage: 95.131% (+0.1%) from 95.014%

Job # MPLBACKEND=Agg

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Image stitching in watcher (#152)

* working code

* testing

* implement as watcher callback

* testing

* remove extra channels arg

* undo

* img_dir -> tiff_out_dir

* update validator testing

* check_stitcher_dir fix

* stitched dir in watcher callbacks

* add notebook

* remove extra watcher case

* undo last commit

* comments

* change load image dtpe

* add image stitching to watcher nb

* add get max img size functionality

* add example run files

* testing and comments

* comment clean up

* fix tests

* watcher build test

* add frameSizePixels to TISSUE_RUN_JSON_SPOOF

* add example run files

* handle for intensities subdir

* notebook updates and _stitched.tiff

* separate file and plot dirs for watcher test

* pycodestyle fixes for assert()

* watcher testing tweaks

* visualize mph dir

* make plot_dir

* make plot_dir in watcher rcb

* clean notebook

* Update templates/stitch_images.ipynb

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* stitching code tweaks

* watcher validators + sub_dir functionality

* notebook tweaks

* pycodestyle

* notebook edits

* change name

* readme update

* default dtype

* fix sub_dir and test issues

* clean up

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

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