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Ran 15 Jun 2022 11:45PM UTC

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Committed 15 Jun 2022 11:36PM UTC coverage: 94.058% (+0.5%) from 93.602%

Job # MPLBACKEND=Agg

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push

travis-ci-com

Committed by

web-flow

Commit Message

Mph norm workflow (#125)

* framework for channel counts function

* testing for first function

* notebook

* updated naming

* first part of full workflow

* move to FOV-based normalization scheme

* update workflow

* fix tests

* add logging

* standardize notebook naming

* check for missing normalization function

* pycodestyle

* Update README.md

* style

* Mph norm workflow curve (#123)

* combine metrics doesn't require bins

* helper function for formatting df

* refactor saving function

* fov helper function

* refactored top level function

* pycodestyle

* use median for small datasets

* update notebook

* close plots

* fix bug in df construction

* sort df by channels

* outlier identification

* plot outliers separately

* remove outlier functionality

* change outlier detection

* updated docstrings

* make test more robust

* code review comments

* add more explanation to notebook on normalization

* typo in environment.yaml

* switch default to 2nd degree polynomial

* update default value and testing

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