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michelole / trec-pm
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Repo Added 28 Jun 2019 04:57PM UTC
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Add support for paired statistical tests

The current [Python code for statistical testing](https://github.com/JULIELab/trec-pm/blob/master/notebooks/sigir2020-notebooks/testing/StatisticalTests.ipynb) uses the `randtest` library for approximate randomization, which assumes groups are independent.

However, our experimental units (topics) are paired (i.e., we run all experiments on all of them) and therefore there is a dependence among runs.

This commit reimplements statistical testing using the popular R `coin` library on top of the existing code for parsing `trec_eval` and `sampleval` files.

1729 of 7571 relevant lines covered (22.84%)

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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
64 stats Add support for paired statistical tests The current [Python code for statistical testing](https://github.com/JULIELab/trec-pm/blob/master/notebooks/sigir2020-notebooks/testing/StatisticalTests.ipynb) uses the `randtest` library for approximate r... push 23 Mar 2020 12:09PM UTC michelole travis-ci-com pending completion  
63 stats Add support for paired statistical tests push 23 Mar 2020 12:05PM UTC michelole travis-ci-com pending completion  
62 stats Add support for statistical tests push 23 Mar 2020 12:04PM UTC michelole travis-ci-com pending completion  
61 master Merge pull request #111 from JULIELab/sigir20 Sigir20 push 21 Mar 2020 11:20AM UTC web-flow travis-ci-com pending completion  
60 master Host NCBI gene info in LFS Since Travis do not support FTP anymore (https://blog.travis-ci.com/2018-07-23-the-tale-of-ftp-at-travis-ci), we switched some time ago to a HTTP mirror provided by the Virginia Bioinformatics Institute. However, this m... push 05 Nov 2019 05:59PM UTC michelole travis-ci-com pending completion  
58 master Fix broken topics when stats have not been published yet push 18 Oct 2019 04:07PM UTC michelole travis-ci-com pending completion  
57 master Merge pull request #106 from michelole/plots Improve R plots push 11 Oct 2019 04:03PM UTC web-flow travis-ci-com pending completion  
56 plots Filter stats by years in the results push 11 Oct 2019 03:50PM UTC michelole travis-ci-com pending completion  
54 master Add a true baseline to query expansion experiments push 10 Oct 2019 10:44AM UTC michelole travis-ci-com pending completion  
53 master Change default query id function to a sortable format Previously, e.g. 20189 < 201710, which is undesired. Prepend topics with a zero so that, e.g. 201809 > 201710. push 10 Oct 2019 10:29AM UTC michelole travis-ci-com pending completion  
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