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int-brain-lab / ibleatools
45%

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DEFAULT BRANCH: main
Repo Added 27 Jun 2025 12:00PM UTC
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12 Jan 2026 02:01PM UTC coverage: 44.837%. Remained the same
20922099860

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web-flow
Spatial encoder (#50)

* New Spatial Encoder Model
run_spatial_encoder.py - from here you can run data loading and train/val/test split, model training/ inference/ r squared score evaluation on test set
spatial_encoder_utils.py - functions for data loading, data structure classes and data processing
spatial_encoder_model.py - the model class, and model training/ evaluation functions

* Adding the model downloading function from S3 cloud.

* Changed the wildcard imports and compatibility with Apple GPUs

* Ruff fix

* Moved the spatial_encoder to src directory - added example to run the spatial encoder

---------

Co-authored-by: asaguy <as7709@columbia.edu>
Co-authored-by: Pranav Rai <rpranaviitk@gmail.com>

851 of 1898 relevant lines covered (44.84%)

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1898 RELEVANT LINES 851 COVERED LINES
0.45 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
20922099860 main Spatial encoder (#50) * New Spatial Encoder Model run_spatial_encoder.py - from here you can run data loading and train/val/test split, model training/ inference/ r squared score evaluation on test set spatial_encoder_utils.py - functions for dat... push 12 Jan 2026 02:07PM UTC web-flow github
44.84
20594732351 main Feature units desc (#51) * Added feature units and their descriptions * Bug fix for rawInd KeyError in the channels dataframe * transform key needs to be checked in the metadata while performing the feature transformation * Changed the raw_uni... push 30 Dec 2025 10:48AM UTC web-flow github
44.84
19934368238 main Inference (#49) * add some control of the unstable alpha features * add the true label score in reveal display * fix regression in model loading * join channel information in the feature pid compute * fix training example * update prediction... push 04 Dec 2025 03:33PM UTC web-flow github
46.16
19428961972 main Added the logic to handle lf and ap file separately (#47) * Added the logic to handle lf and ap file separately Now we have the option to specify just the ap or lf file for doing the feature calculations. * Added the code to handle other neurop... push 17 Nov 2025 12:08PM UTC web-flow github
45.8
18881905159 main Voltage feature set order (#38) * WIP on lf_features models * Added the SDSC utility functions A luigi workflow is created to create the SDSC task files for job parallelization. Also added outlier handling code for very high alpha_mean and alph... push 28 Oct 2025 04:30PM UTC web-flow github
45.35
18493838417 main Modify the query to not take session wide qc into account (#37) push 14 Oct 2025 10:42AM UTC web-flow github
49.76
18100375442 main Addition of LF features (#33) * Added aperiodic and residual lf features * Version bumps * Added the specparam to dependecies for additional lf features * Added utlilty functions to upload and downloads features data from AWS * Added utility ... push 29 Sep 2025 02:29PM UTC web-flow github
49.76
17578409707 main Version bump and added true label score push 09 Sep 2025 09:41AM UTC rai-pranav github
49.4
17485020386 main Sphinx documentation (#27) * Fix of the dartsort parameter such that it uses scratch_dir * Added spikeinterface backend * Added Google style documentation for all the functions * Ruff fixes * Changes to documentation and README.md push 05 Sep 2025 06:03AM UTC web-flow github
49.43
16727533961 main Quick change to plots to integrate mapping rather than Allen as default push 04 Aug 2025 03:38PM UTC GaelleChapuis github
50.1
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