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int-brain-lab / ibleatools
44%

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DEFAULT BRANCH: main
Repo Added 27 Jun 2025 12:00PM UTC
Files 19
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27 May 2026 11:39AM UTC coverage: 44.167% (-0.7%) from 44.837%
26508928889

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github

web-flow
Merging some pending features, before I do the refactor for feature computation (#68)

* Added parameters for different durations for LF and AP feature calculation.

* Added todo

* Included Np2 probe geometry in the calculations.

* Added some TODOs for sdsc utils

* Corrected the sampling frequency for csd calculations

* Added the cadzow filter

* Added log summarizer function

* Add LF spatial filter passthrough

* Update setup output directory tests for split durations

* Updated tests to include the new change that you need to have both duration_ap and duration_lf. Also fixing the version of h5py, to be compatible with dartsort

* Ruff formatting, and added that to unit tests as well

* Compute max_ap and max_lf time irrespective of duration values. And change the default values of lfp duration to 25

867 of 1963 relevant lines covered (44.17%)

0.44 hits per line

Relevant lines Covered
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1963 RELEVANT LINES 867 COVERED LINES
0.44 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
26508928889 main Merging some pending features, before I do the refactor for feature computation (#68) * Added parameters for different durations for LF and AP feature calculation. * Added todo * Included Np2 probe geometry in the calculations. * Added some TO... push 27 May 2026 11:42AM UTC web-flow github
44.17
20922099860 main Spatial encoder (#50) * New Spatial Encoder Model run_spatial_encoder.py - from here you can run data loading and train/val/test split, model training/ inference/ r squared score evaluation on test set spatial_encoder_utils.py - functions for dat... push 12 Jan 2026 02:07PM UTC web-flow github
44.84
20594732351 main Feature units desc (#51) * Added feature units and their descriptions * Bug fix for rawInd KeyError in the channels dataframe * transform key needs to be checked in the metadata while performing the feature transformation * Changed the raw_uni... push 30 Dec 2025 10:48AM UTC web-flow github
44.84
19934368238 main Inference (#49) * add some control of the unstable alpha features * add the true label score in reveal display * fix regression in model loading * join channel information in the feature pid compute * fix training example * update prediction... push 04 Dec 2025 03:33PM UTC web-flow github
46.16
19428961972 main Added the logic to handle lf and ap file separately (#47) * Added the logic to handle lf and ap file separately Now we have the option to specify just the ap or lf file for doing the feature calculations. * Added the code to handle other neurop... push 17 Nov 2025 12:08PM UTC web-flow github
45.8
18881905159 main Voltage feature set order (#38) * WIP on lf_features models * Added the SDSC utility functions A luigi workflow is created to create the SDSC task files for job parallelization. Also added outlier handling code for very high alpha_mean and alph... push 28 Oct 2025 04:30PM UTC web-flow github
45.35
18493838417 main Modify the query to not take session wide qc into account (#37) push 14 Oct 2025 10:42AM UTC web-flow github
49.76
18100375442 main Addition of LF features (#33) * Added aperiodic and residual lf features * Version bumps * Added the specparam to dependecies for additional lf features * Added utlilty functions to upload and downloads features data from AWS * Added utility ... push 29 Sep 2025 02:29PM UTC web-flow github
49.76
17578409707 main Version bump and added true label score push 09 Sep 2025 09:41AM UTC rai-pranav github
49.4
17485020386 main Sphinx documentation (#27) * Fix of the dartsort parameter such that it uses scratch_dir * Added spikeinterface backend * Added Google style documentation for all the functions * Ruff fixes * Changes to documentation and README.md push 05 Sep 2025 06:03AM UTC web-flow github
49.43
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