hammerlab / vaxrank
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master: 86%

LAST BUILD BRANCH: update-paper
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LAST BUILD ON BRANCH vaxrank-self-peptide-predictor
branch: vaxrank-self-peptide-predictor
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travis-ci

julia326 
cr alex

392 of 421 relevant lines covered (93.11%)

1.86 hits per line

Relevant lines Covered
421 RELEVANT LINES 392 COVERED LINES
1.86 HITS PER LINE
Source Files on vaxrank-self-peptide-predictor
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
144 vaxrank-self-peptide-predictor cr alex push julia326 travis-ci pending completion  
143 vaxrank-self-peptide-predictor Adding reference-peptide check with FM-index caching and a unit test. Also: - min_epitope_score threshold in predict_epitopes: changing > to >= - predict_epitopes now returns an OrderedDict keyed by peptide sequence - fixing intermittent FP error ... push julia326 travis-ci pending completion  
128 vaxrank-self-peptide-predictor Using a generator instead of a list to capture reference peptides. push julia326 travis-ci pending completion  
126 vaxrank-self-peptide-predictor Adding reference-peptide check with FM-index caching and a unit test. push julia326 travis-ci pending completion  
124 vaxrank-self-peptide-predictor Undoing netmhc-bundle Travis addition, using a random binding MHC predictor instead push julia326 travis-ci pending completion  
116 vaxrank-self-peptide-predictor Using shellinford for FM index (reference peptide caching), adding some docstrings push julia326 travis-ci pending completion  
114 vaxrank-self-peptide-predictor Added caching of self-peptides, also changed logic as per Alex's review push julia326 travis-ci pending completion  
112 vaxrank-self-peptide-predictor removing some unnecessary comments push julia326 travis-ci pending completion  
111 vaxrank-self-peptide-predictor WIP: self-peptide filtering (still need to add caching and test) push julia326 travis-ci pending completion  
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