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griffithlab / civic-server
90%
master: 16%

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LAST BUILD BRANCH: staging
DEFAULT BRANCH: master
Repo Added 08 Jun 2018 02:20AM UTC
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LAST BUILD ON BRANCH civicpy
branch: civicpy
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  • civicpy
  • 787-user-country
  • HEAD
  • aacr-perf-fixes
  • add-doi-badge
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pending completion
2286

Pull #589

travis-ci

web-flow
Use the nightly civicpy cache pkl location

Currently, CIViCpy would look for the cache pkl file in the default
location ~/.civicpy/cache.pkl. If that file doesn't exit or is
out-of-date, CIViCpy will download the nightly civicpy cache pkl file to
this default location and then use it to create the VCFs.

This is silly when the nightly pkl file lives on
the same machine so this PR sets the CIVICPY_CACHE_FILE environment
variable to point to the nightly pkl file. This will overwrite the default
and result in the nightly pkl file being used directly to create the
VCFs.
Pull Request #589: Use the nightly civicpy cache pkl location

2002 of 2232 relevant lines covered (89.7%)

3.55 hits per line

Relevant lines Covered
Build:
Build:
2232 RELEVANT LINES 2002 COVERED LINES
3.55 HITS PER LINE
Source Files on civicpy
  • List 0
  • Changed 1
  • Source Changed 0
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
2286 civicpy Use the nightly civicpy cache pkl location Currently, CIViCpy would look for the cache pkl file in the default location ~/.civicpy/cache.pkl. If that file doesn't exit or is out-of-date, CIViCpy will download the nightly civicpy cache pkl file to... Pull #589 10 Feb 2020 03:53PM UTC web-flow travis-ci pending completion  
2285 civicpy Use the nightly civicpy cache pkl location Currently, CIViCpy would look for the cache pkl file in the default location ~/.civicpy/cache.pkl. If that file doesn't exit or is out-of-date, CIViCpy will download the nightly civicpy cache pkl file to... push 10 Feb 2020 03:53PM UTC susannasiebert travis-ci pending completion  
2228 civicpy Upgrade civicpy to the latest version Pull #574 22 Jan 2020 07:53PM UTC web-flow travis-ci pending completion  
2227 civicpy Upgrade civicpy to the latest version push 22 Jan 2020 07:42PM UTC susannasiebert travis-ci pending completion  
2024 civicpy Add `from_remote_cache=False` to `update_cache` call so that cache is hard loaded Pull #534 16 Sep 2019 05:50PM UTC web-flow travis-ci pending completion  
2023 civicpy Add `from_remote_cache=False` to `update_cache` call so that cache is hard loaded push 16 Sep 2019 05:44PM UTC susannasiebert travis-ci pending completion  
1974 civicpy Install civicpy dependency push 27 Aug 2019 06:23PM UTC susannasiebert travis-ci pending completion  
1975 civicpy Install civicpy dependency Pull #526 27 Aug 2019 06:22PM UTC web-flow travis-ci pending completion  
1973 civicpy Add job to create the civicpy pkl file push 27 Aug 2019 06:20PM UTC susannasiebert travis-ci pending completion  
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