galantelab / sideRETRO
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LAST BUILD ON BRANCH canalysis
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Relevant lines Covered
2484 RELEVANT LINES 2373 COVERED LINES
2381.29 HITS PER LINE
Source Files on canalysis
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
174 canalysis FIX: cluster.c, db.c, merge_call.c, recluster.c Remove 'recluster.c' and merge its functionality to 'cluster.c'. Catch all alignments whose mate overlaps a given exon and filter them by: blacklisted chromosomes (e.g. chrM); read cannot be exonic... push thiago-miller travis-ci pending completion  
173 canalysis ADD: correlation.c interface Add statistics pearson and spearman correlation brought from GSL push thiago-miller travis-ci pending completion  
172 canalysis ADD: correlation.c interface Add statistics pearson and spearman correlation brought from GSL push thiago-miller travis-ci pending completion  
168 canalysis FIX: process_sample.c: int -> float max_base_frac push thiago-miller travis-ci pending completion  
167 canalysis ADD: abnormal.c, process_sample.c (max-base-frac) Filter reads according to the base frequency fraction in order to avoid aligments against genome repetitive motifs push thiago-miller travis-ci pending completion  
166 canalysis FIX: cluster.c (prepare_query_stmt): blacklist_chr Avoid clusters from and to the chromosomes into blacklist_chr set push thiago-miller travis-ci pending completion  
165 canalysis FIX: dbscan.c (dbscan_cluster): Same point shared DBSCAN is not entirely deterministic: border points that are reachable from more than one cluster can be part of either cluster, depending on the order the data are processed. (Wikipedia) Fix t... push thiago-miller travis-ci pending completion  
164 canalysis FIX: db.c (clustering table) Fix foreign key issue by adding the clustering id as part of the weak key. Add gene_name as parental_gene_name in order to facilitate future analysis push thiago-miller travis-ci pending completion  
163 canalysis FIX: recluster.c (prepare_query_stmt): cluster_id Change cluster_id to id push thiago-miller travis-ci pending completion  
162 canalysis ADD: recluster.c interface Add reclustering step in order to validate the clusters found. The clusters will be analysed according to distance from, number of, and number of reads for reclustering each putative parental gene push thiago-miller travis-ci pending completion  
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