cokelaer / quality_control
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master: 91%

LAST BUILD BRANCH: main
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coverage: 91.228%. Remained the same
Relevant lines Covered
57 RELEVANT LINES 52 COVERED LINES
1.82 HITS PER LINE
Source Files on main

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
32712098815 main Declare the atropos report and reset the statistics logs With atropos, the cutadapt.txt report was created as a side effect of --report-file. Nothing declared it, so multiqc, which reads that file, could not be resolved and the DAG could not be b... push cokelaer github
91.23
32601072006 main Add a multiqc report and containerize the trimming MultiQC aggregates the FastQC and cutadapt results in multiqc/multiqc_report.html and each sample report links it. The rule uses the multiqc container and the sequana_wrappers shell, as in the ot... push cokelaer github
91.23
32600045769 main Do not nest the trimming outputs in the summary rule input push cokelaer github
91.23
32599353320 main Fix the broken options and the report of the quality_control pipeline Two of the four pipeline options could not even build the workflow: - --skip-phix-removal used an undefined __data__input variable; the raw data is now trimmed directly - --... push cokelaer github
91.23
32596025339 main Fix the anchor keys of the summary sections The key was written "anchor'" with a stray quote in the three sections, so they had no anchor and their sidebar entries pointed to nothing. The adapter section was also a copy of the phix one and reused... push cokelaer github
91.07
24562779052 main Fix container push cokelaer github
91.07
24558130828 main Fix missing dependency push cokelaer github
91.07
24557165238 main remove useless container, upgrade version push cokelaer github
91.07
24556603046 main update CI push cokelaer github
91.07
24554786506 main Migrate quality_control pipeline to modern sequana standards - Replace all wrapper: directives with manager.get_shell()/manager.get_run() (fastqc, bwa/build, bwa/align, fastp, rulegraph, dot2svg) - Convert fastq_stats rules to inline run: block... push cokelaer github
91.07
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