• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

broadinstitute / cromwell
70%
develop: 95%

Build:
Build:
LAST BUILD BRANCH: aws-tutorial
DEFAULT BRANCH: develop
Repo Added 07 May 2015 02:39PM UTC
Files 11
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH rm_globbing
branch: rm_globbing
CHANGE BRANCH
x
Reset
  • rm_globbing
  • 0.19_hotfix
  • 0.21
  • 0.21_hotfix
  • 0.22
  • 0.22_hotfix
  • 0.7
  • 23
  • 23_hotfix
  • 24
  • 24_FC_development
  • 24_hotfix
  • 25
  • 25_hotfix
  • 26_hotfix
  • 26_hotfix_2
  • 26_hotfix_io_retries
  • 27_hotfix
  • 28.2
  • 28_changelog
  • 28_hotfix
  • 29
  • 29_hotfix
  • 403_auth_failure
  • 910
  • CromwellClientFailures
  • FixGcrToken
  • Papiv2
  • PreWom
  • PubSubBusinessLogging
  • RT-fix
  • RT-fix-dev
  • acceptJSONAuth
  • addSqlToChangelog
  • aen_upgrade_import
  • allowForDockerTagAndHash
  • aws_backend
  • batchRequest_29
  • batch_limit
  • bringChangeFrom24Hotfix
  • c14e64d
  • call-caching-docs
  • call_actor_avoidance
  • call_caching_jes_auth
  • catchWEADeath
  • ccc_testing
  • centaur_restart
  • cjl_#1097
  • cjl_#1435
  • cjl_#1463
  • cjl_#1479
  • cjl_#1587
  • cjl_#1596
  • cjl_#1597
  • cjl_1463_changelog
  • cjl_1594
  • cjl_1615
  • cjl_1802
  • cjl_1971
  • cjl_2438
  • cjl_2438_hotfix
  • cjl_2455
  • cjl_CCA_strawman
  • cjl_DEPRECATED
  • cjl_akka_http_10.0.6
  • cjl_array_construction_checks
  • cjl_backend_retries
  • cjl_batch_imports_develop
  • cjl_better_validation_messages
  • cjl_call_caching_hashing_rebased
  • cjl_call_caching_timing_diagrams
  • cjl_callcaching_hashing
  • cjl_cat_bump
  • cjl_cc_task_name_huh
  • cjl_centaur_client_test
  • cjl_client_publish-fixup
  • cjl_coerce_map_to_pairs
  • cjl_conditional_changelog
  • cjl_conditionals
  • cjl_consistent_failure
  • cjl_consistent_failure_hotfix
  • cjl_cromwell.server
  • cjl_cromwell_api_client
  • cjl_cromwell_api_client_crosspub
  • cjl_decode_responses
  • cjl_default_docker_submit_without_redirection
  • cjl_default_runtime_attributes_bug
  • cjl_define_defined
  • cjl_diff_docs
  • cjl_disadvertise_allowResultReuse
  • cjl_ecs_placeholder
  • cjl_ejea_crash_logging
  • cjl_ejea_spec_redux
  • cjl_empty_array_literals
  • cjl_execution_events_for_everybody
  • cjl_failure_metadata_migration
  • cjl_fingers_in_ears
  • cjl_fixup_examples.conf
  • cjl_flaky_test_2193
  • cjl_flatmapn
  • cjl_flatten_causedBy_metadata
  • cjl_give_FilePassingWorkflowSpec_more_time
  • cjl_if_then_else
  • cjl_ifthenelse_changelog
  • cjl_ignore_bad_test
  • cjl_imports
  • cjl_invalidate_bad_cache_fix
  • cjl_jes_6_day_limit
  • cjl_jes_api_query_manager
  • cjl_jes_glob_fix
  • cjl_jes_polling_batches
  • cjl_less_scary_logging
  • cjl_metadata_in_memory
  • cjl_more_clienty_bits
  • cjl_optionalInputs
  • cjl_optional_file_size
  • cjl_optional_files
  • cjl_optional_types
  • cjl_optionals_and_defaults
  • cjl_pairs
  • cjl_pullapprove_fixup
  • cjl_query_responses
  • cjl_reformat_ccdiff
  • cjl_remove_SubWorkflowStoreCompleteSuccess
  • cjl_remove_semicolons
  • cjl_remove_semicolons_develop
  • cjl_runtime_attributes_in_backends
  • cjl_safer_namespace_loading
  • cjl_shhhhh_it_down
  • cjl_simple_cache_hit_metadatum
  • cjl_sneaky_test
  • cjl_test
  • cjl_test_centaur_cjl_optional_arrays
  • cjl_test_upgrade
  • cjl_the_globbit
  • cjl_token_dispenser
  • cjl_trim_md5_files
  • cjl_wdl4s_bump
  • cjl_womtool_inputs
  • cjl_workflow_id_label
  • cjl_workflow_labels
  • cjl_workflow_name_limit
  • cjl_write_lines_jes
  • cleanUpDockerLookup
  • compose
  • cromwell-1079
  • cromwell-1087
  • cromwell-1187
  • cromwell-1266
  • cromwell-1270
  • cromwell-1308
  • cromwell-1325
  • cromwell-1383
  • cromwell-1386
  • cromwell-1483
  • cromwell-1501
  • cromwell-1510
  • cromwell-1523
  • cromwell-1593
  • cromwell-1617
  • cromwell-1691
  • cromwell-1754
  • cromwell-1785
  • cromwell-1817
  • cromwell-1848
  • cromwell-1886
  • cromwell-1932
  • cromwell-1938
  • cromwell-1950
  • cromwell-1978
  • cromwell-1982
  • cromwell-1990
  • cromwell-1990v2
  • cromwell-1999
  • cromwell-2000
  • cromwell-2033
  • cromwell-2066
  • cromwell-2079
  • cromwell-2094
  • cromwell-2145
  • cromwell-2292
  • cromwell-2309
  • cromwell-2373
  • cromwell-2453
  • cromwell-2467
  • cromwell-2475
  • cromwell-2483
  • cromwell-2525
  • cromwell-2535
  • cromwell-2570
  • cromwell-3552
  • cromwell-789
  • cromwell-922
  • cromwell-initialization-fix
  • cromwomification
  • db_wdl4s_symlink_update
  • deb_add_pull_approve
  • declaration_evaluation
  • develop
  • develop_test
  • dockerCacheMode
  • docker_mysql
  • dont_override_events
  • dont_override_events_23
  • eventsFix
  • eventsFixFor22
  • eventually15s
  • eventually2
  • eventually3
  • eventually30s
  • executionStoreImp
  • failHashIfFileNotFound
  • firecloud
  • fixCallCacheDiff
  • fixCallCachingDiff28Hotix
  • fixCentaurLocalLocalization
  • fixContinueWhilePossible
  • fixDockerDeadlocok
  • fixRcErrorHandling
  • fixRetry
  • fixTimingDiagram26
  • fixWorkflowName
  • fmc-PBE-Interfaces
  • fmc_HtCondorAsConfBackend
  • fmc_cachingSL
  • fmc_dockerBashCmdFix
  • fmc_htCondorDockerConf
  • fmc_htCondorNativeSpecs
  • fmc_htCondorWorkingDir
  • fmc_htCondor_dockerConf
  • fmc_localizationLogging
  • fmc_queryPostAPIFix
  • full_uris_in_md
  • gks-htcondor-abort
  • google_auth
  • hf_logback
  • hf_logback_dev
  • ioActor2
  • ioActor2wgcsScope
  • ioActorOnIoDispatcher
  • jesExecutionEvents
  • jg_1375
  • jg_1770
  • jg_1795
  • jg_1811
  • jg_1829
  • jg_1835
  • jg_1851
  • jg_1870
  • jg_1893
  • jg_add_dispatchers
  • jg_add_sentry
  • jg_add_some_stats
  • jg_add_travis_caching
  • jg_akka_http
  • jg_akka_http_2
  • jg_bring_back_binding_default
  • jg_broader_travis
  • jg_bump_akka
  • jg_centaur
  • jg_centaur_2
  • jg_centaur_3
  • jg_coursier
  • jg_cromwell_24_bump
  • jg_flush_it_real_good
  • jg_flush_it_real_good_2
  • jg_flush_it_real_good_3
  • jg_flush_it_real_good_4
  • jg_for_jose
  • jg_gzip_as_requested
  • jg_jes_config_whitelist
  • jg_local_centaur_travis
  • jg_lots_o_cherry_picks
  • jg_moar_dispatchers
  • jg_more_testkit_removals
  • jg_move_lenthall_spray_here
  • jg_multiple_submit_workers
  • jg_no_mainspec_travis
  • jg_pre_restart
  • jg_rc
  • jg_readme_config
  • jg_replace_runWdl
  • jg_restrict_metadata
  • jg_revert_swagger
  • jg_rollback_2
  • jg_scala_2_12_no_unused
  • jg_services_use_dispatchers
  • jg_status_endpoint
  • jg_submit_performance
  • jg_submit_performance_2
  • jg_submit_performance_3
  • jg_test_centaur
  • jg_test_ec
  • jg_test_ec_2
  • jg_test_ec_30
  • jg_test_new_centaur
  • jg_test_some_stuff
  • jg_testing_centaur_akka_http
  • jg_things_that_make_you_go_hmmmm
  • jg_tunable_batch_interval
  • jg_unexpected_actor_death
  • jg_update_logback
  • jg_update_wdl4s_no_repeat_fqn
  • jg_upgrade_akka
  • jg_upgrade_scala
  • jg_use_grpc_codes
  • jg_workflow_name
  • js_2178
  • js_2178_fix_double_quotes
  • js_crapola
  • js_crude_validation
  • js_green_inte
  • js_green_integration
  • js_interloper_pullapprove
  • js_job_store_extra_quotation
  • js_job_store_extra_quotation_develop
  • js_test_develop
  • js_test_test
  • js_update_readme_paths
  • js_wdlfile_validation
  • jsonFormatForOptional
  • jt_0.21
  • jt_ref_comments
  • kc_no_restart
  • kc_sbt_docker
  • kc_sbt_docker2
  • kc_sbt_docker_compose
  • kc_scale
  • kc_svc_acct_1656
  • ks_1965_harden
  • ks_1980_patch
  • ks_2017_edit
  • ks_actor_singletons_to_system
  • ks_allow_backends
  • ks_allow_dotted_dirs
  • ks_app_conf_diff
  • ks_app_conf_readme
  • ks_async_aws
  • ks_bad_file_string
  • ks_catch_runnable_scopes
  • ks_causal_auth_failures
  • ks_ci_refactor
  • ks_client_pass_options
  • ks_client_pass_options_take_2
  • ks_client_pass_options_take_3
  • ks_concurrent_jobs_for_all
  • ks_conf_and_db_tests
  • ks_config_tmpdir
  • ks_debug_potpourri
  • ks_dependency_patch
  • ks_disable_type_annotation_inspections
  • ks_doc_update
  • ks_docker_push
  • ks_docker_push_0.21_hotfix
  • ks_docker_push_0.22_hotfix
  • ks_docker_tag_caas
  • ks_dockerize_paths
  • ks_dont_hardcode_rest_workflow_type
  • ks_encrypt_options
  • ks_encrypt_options_0.22
  • ks_encrypt_options_hotfix
  • ks_exclude_scalacheck_again
  • ks_fix_and_test_docs
  • ks_glob_standard
  • ks_handle_non_200
  • ks_liquibase_then_bind
  • ks_liquibase_updates
  • ks_local_docker_hash
  • ks_metadata_refresh_bug
  • ks_metadata_service
  • ks_move_version_endpoint
  • ks_mysql_empty_lobs
  • ks_patches
  • ks_pin_centaur_0.21_hotfix
  • ks_pin_centaur_0.22_hotfix
  • ks_pin_centaur_develop
  • ks_potpourri
  • ks_println_pem_489f66b
  • ks_publish_develop_docker
  • ks_reduce_synchronization
  • ks_reference_conf
  • ks_remove_deprecated_code
  • ks_rename_binding_timeout
  • ks_report_bad_inputs
  • ks_restore_backend_status
  • ks_restore_backend_status_24
  • ks_restore_external_tests
  • ks_resync_slick_liquibase
  • ks_rm_jes_copying
  • ks_rm_jes_copying_2
  • ks_rm_wf_inputs
  • ks_runtime_attribute_edits
  • ks_sfs_cache_copy_method_wip
  • ks_sfs_copying
  • ks_slick_3_2
  • ks_snap
  • ks_standard_async
  • ks_standard_backend
  • ks_standard_backend_w_jes
  • ks_std_back_abort_patch
  • ks_store_custom_labels_25_hotfix
  • ks_store_custom_labels_develop
  • ks_summary_status
  • ks_swra_default_shutdown
  • ks_tes_log_info
  • ks_tes_patch
  • ks_test_build_updates
  • ks_test_bump_dependencies
  • ks_test_docker_vault
  • ks_timeout_changelog
  • ks_warn_jes_aes
  • ks_workflow_type_take_2
  • ks_ya_examples_update
  • kv_crom28_bug
  • kv_crom29_relnotes
  • kv_doc_con-job
  • kv_readme
  • kv_readme_cli
  • lessHashing
  • link_cromwell_branch_to_centaur
  • master
  • mc-rm_executionStore_query
  • meow_mix
  • metadata_htcondor_1454
  • mlc_28_preemptible_Fix
  • mlc_aws_io
  • mlc_aws_one_task
  • mlc_borked_abort
  • mlc_burn_the_boats
  • mlc_caching_batching
  • mlc_call_caching_perf
  • mlc_cold_hard_cache
  • mlc_config_cwl_gull
  • mlc_confirm_preemptible
  • mlc_dekv
  • mlc_develop_preemptible_fix
  • mlc_docker_hashifact
  • mlc_docker_library_27
  • mlc_docker_library_develop
  • mlc_docs
  • mlc_ejea_abort_fixes
  • mlc_embiggen_metadata_value
  • mlc_expt
  • mlc_ficus
  • mlc_fix_prefix
  • mlc_flags
  • mlc_gcs_fail_on_underscores
  • mlc_its_good_to_have_scoptions
  • mlc_job_store_batching
  • mlc_jobstore_tinyint
  • mlc_jt_fixes
  • mlc_kill_docker_stuff_for_realz
  • mlc_length_nee_size
  • mlc_log_it_just_in_case
  • mlc_metric_shardload
  • mlc_monad_xformers
  • mlc_mwda_or_bust
  • mlc_no_aws
  • mlc_no_pipe_stripping
  • mlc_nohash
  • mlc_non_root
  • mlc_notroot_legit
  • mlc_nullable_job_store_simpleton_values
  • mlc_nullable_job_store_simpleton_values_develop
  • mlc_only_check_stderr_if_fail_on_stderr
  • mlc_patvars
  • mlc_post_post_mvp
  • mlc_release_subprojected_wdl4s
  • mlc_responsive_after_db_issue
  • mlc_responsive_after_db_issue_develop
  • mlc_ribbit
  • mlc_sink_sync_develop
  • mlc_sink_sync_hotfix
  • mlc_son_of_sleepy_aws
  • mlc_subworkflows_are_people_too
  • mlc_test
  • mlc_testing
  • mlc_trailing_newlines_plz
  • mlc_trusty_edge
  • mlc_trusty_edge_deux
  • mlc_undo_21
  • mlc_unstick_abort_develop
  • mlc_unstick_abort_hotfix
  • mlc_usable_console
  • mlc_users_other_than_root
  • mlc_wdl_b_gone
  • mlc_wdlsource_oopsie
  • mlc_wom_it_up
  • mlc_workflow_before_job
  • mlc_workflow_failure_mode_fix
  • mlc_workflow_name_embiggen_0.22
  • mlc_workflow_name_embiggen_develop
  • mlc_workflow_names_really_should_not_be_crazy_long_they_overflow_reasonably_sized_database_columns
  • mlc_workflow_type
  • moarRetries
  • moreRetries
  • more_failure_context
  • nb_run_tests
  • nio-actor
  • null_rendering
  • papi_staging
  • quay
  • release-0.22
  • releaseCromwellOnGithub
  • release_candidate_23
  • renameWorkflowOptionsInMD
  • rm_1737
  • rm_1737Fix
  • rm_1920
  • rm_1958
  • rm_2297
  • rm_23
  • rm_2597
  • rm_2597_29h
  • rm_25_labels_db_update
  • rm_25docs
  • rm_908
  • rm_WEA
  • rm_WEA_update
  • rm_addLabels
  • rm_add_inputs
  • rm_auth_test
  • rm_centaur
  • rm_centaurTest
  • rm_centaur_changes
  • rm_centaur_testing
  • rm_centaur_tests
  • rm_collectorFix_develop
  • rm_collectorKey_fix_0.21
  • rm_collectorKey_fix_0.22
  • rm_copyLogs
  • rm_copyWfLogs
  • rm_copyWfLogs2
  • rm_cromwell_SWRM
  • rm_detritus_bug
  • rm_dev_labels_update
  • rm_develop
  • rm_fc_project
  • rm_gcs_project
  • rm_gotcBuild
  • rm_gotc_build
  • rm_idea_2
  • rm_jesStaging
  • rm_jes_copying
  • rm_jes_staging
  • rm_labelValidation
  • rm_labels_cromwellClient
  • rm_labels_fix
  • rm_mlc_copyingJobOutputsRebase
  • rm_monitoring
  • rm_new
  • rm_optionalRuntimeAttrs_develop
  • rm_query-labels
  • rm_release
  • rm_releaseNotes_21
  • rm_rerun_centaur
  • rm_sleepBranchTest
  • rm_stdout
  • rm_temp
  • rm_testTes
  • rm_turnOnCaching
  • rm_update_detritus_value
  • rm_update_detritus_value_24
  • rm_validateOptions
  • rm_versioning
  • rm_wf_inputs
  • rollbackUnderscores
  • sdf_backend_factory
  • sdf_call_stdout
  • sparkbackend_minorfixes
  • speedTest
  • ss_exclude_labels
  • ss_scale_whitelist_bucket
  • staging
  • subWorkflowDocs
  • subworkflow2
  • syncFS
  • tes_failure
  • testCentaur
  • tj-27_hotfix-docker-cache-mode
  • tj-allowResultReuse
  • tj-cc-changelog
  • tj-cromwell-client-version
  • tj-dependency-update
  • tj-fix-27
  • tj-fixAllowResultReuse
  • tj-mem-leak
  • tj-test-flakiness
  • tj_dockerfix_v2_26_hotfix
  • tj_dockerfix_v2_26_hotfix_2
  • tj_local_docker_hash
  • tj_release
  • tn-credentials
  • travis_updates
  • try_tyranny_you_might_like_it
  • type_syntax
  • updateAllowResultReuse
  • updateDockerLookup
  • updateGoogleNio
  • updateTravis
  • update_release_wdl
  • wdl4sUpdate
  • wdl4s_rebase
  • wfNameTest
  • womification
  • zoneb

pending completion
11446

push

travis-ci

kshakir
More updates to globbing.
SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get.
Made the scripts easier to read, without stripping "|" from the instantiated commands.
Moved SharedFileSystem.pathPlusSuffix to core's PathFactory, where it may be used by JES.
Updated changelog with changes for SFS globbing.
Try deref symlinks in globs explicitly first, using -L, then cross fingers that implicit works.
Now that testing is complete, switch the centaur branch back to develop.

4854 of 6934 relevant lines covered (70.0%)

0.7 hits per line

Relevant lines Covered
Build:
Build:
6934 RELEVANT LINES 4854 COVERED LINES
0.7 HITS PER LINE
Source Files on rm_globbing
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
11446 rm_globbing More updates to globbing. SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get. Made the scripts easier to read, without stripping "|" from the instantiated commands. Moved SharedFileSystem.pathPlusSuffix to co... push 05 Jan 2017 04:10PM UTC kshakir travis-ci pending completion  
11444 rm_globbing Try deref explicitly first, then cross fingers that implicit works. push 05 Jan 2017 03:13PM UTC kshakir travis-ci pending completion  
11442 rm_globbing So... linux uses `-L` to deref sym links. push 05 Jan 2017 12:41AM UTC kshakir travis-ci pending completion  
11438 rm_globbing More updates to globbing. SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get. Made the scripts easier to read, without stripping "|" from the instantiated commands. Moved SharedFileSystem.pathPlusSuffix to co... push 04 Jan 2017 11:10PM UTC kshakir travis-ci pending completion  
11427 rm_globbing More updates to globbing. SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get. Made the scripts easier to read, without stripping "|" from the instantiated commands. Moved SharedFileSystem.pathPlusSuffix to co... push 04 Jan 2017 08:45AM UTC kshakir travis-ci pending completion  
11426 rm_globbing More updates to globbing. SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get. Made the scripts easier to read, without stripping "|" from the instantiated commands. Moved SharedFileSystem.pathPlusSuffix to co... push 04 Jan 2017 08:12AM UTC kshakir travis-ci pending completion  
11425 rm_globbing More updates to globbing. SharedFileSystem check for path strings uses buildPath instead of the incorrect Paths.get. Made the scripts easier to read, without stripping "|" from the instantiated commands. Moved SharedFileSystem.pathPlusSuffix to co... push 04 Jan 2017 07:25AM UTC kshakir travis-ci pending completion  
11337 rm_globbing toRealString to convert to GCS path push 21 Dec 2016 10:29PM UTC ruchim travis-ci pending completion  
11334 rm_globbing separate rc of command from rc of globManipulation script push 21 Dec 2016 08:23PM UTC ruchim travis-ci pending completion  
11313 rm_globbing cleanup push 20 Dec 2016 05:56PM UTC ruchim travis-ci pending completion  
See All Builds (9674)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc