biocore / biom-format
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Normalize metadata on parse (#853)

* TST: verify bytes -> utf-8 on parse

* Force general parser to return utf-8 if presented with bytes

* REL/DOC: note bugfix, demark version changes for release

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2630 of 3046 relevant lines covered (86.34%)

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Builds Branch Commit Type Ran Committer Via Coverage
1200 master Normalize metadata on parse (#853) * TST: verify bytes -> utf-8 on parse * Force general parser to return utf-8 if presented with bytes * REL/DOC: note bugfix, demark version changes for release push web-flow travis-ci-com pending completion  
1196 master DOC: Note AddData in changelog push wasade travis-ci-com pending completion  
1194 master REL: bump to 2.1.9 push wasade travis-ci-com pending completion  
1193 master Simplify concat (#851) * Fix citation URL * API: simplify the concat operation * Pass on args/kwargs * DOC: changelog mention * Accidentally duplicated a test * Addressing @eldeveloper's comments push web-flow travis-ci-com pending completion  
1191 master Adjacency to biom (#850) * Fix citation URL * TST: unit test for an adjacency format * API: added support for parsing adjacency tables * Use COO matrix first * Update biom/table.py Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucs... push web-flow travis-ci-com pending completion  
1179 master Fix citation URL (#849) push web-flow travis-ci-com pending completion  
1178 master Merge 5b10a687b into d8b1107d3 Pull #849 web-flow travis-ci-com pending completion  
1177 master PERF: Optimize remove_empty (#847) * PERF: Optimize remove_empty This uses vectorized operations to figure out which rows/columns to remove. Takes processing a 12,000 x 200,000 table from 20 seconds to 1.1 seconds. * DOC: Add changelog no... push web-flow travis-ci-com pending completion  
1175 master add to_anndata conversion (#845) * add to_anndata conversion * add anndata to travis * update docstring typo * update travis * update test * add options * update tests * update test to skip if anndata not installed * flake8 push web-flow travis-ci-com pending completion  
1173 master Fast merge (#848) * ENH: a much faster way to merge tables * ENH: a much faster way to merge tables * DOC: changelog and doctest updates * Addressing @antgonza's comment * TST/BLD: fix at least some failing tests * SparseDataFrame ... push web-flow travis-ci-com pending completion  
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