bihealth / varfish-annotator

70%

main: 67%

LAST BUILD ON BRANCH 27-add-self-test-to-annotation

branch: 27-add-self-test-to-annotation

CHANGE BRANCH

x

Reset

• 27-add-self-test-to-annotation
• 28-implement-ci
• ee0ab3c98d75f701b961f87f42a85a92ef1d6d46
• main
• 31-add-end-to-end-smoke-test-to-ci-for-annotate-and-annotate-sv
• 4715ff6433d6c1ae2983f1673661b9ad6e9869cd
• 5bde166473a124a08d7213bde027651cc276f35b
• 7dffcdd2f043222656f4254e00f137241660f422
• ef0c9e74af14c652abcfcbe5f97ce3aee041ccb1
• d23abccc4f7d7e60579ec25cd277586cadbb40cc
• 33-add-end-to-end-smoke-test-to-ci-for-annotate-svs
• 799ebadf4f29c61d49e82706171e20b34f610a40
• 832c6820d78ee94320c12537941e625a868d11eb
• 969f161bd5c77b827c50486bc70a40466bf2c31a
• 11-output-is-not-gzipped-when-file-extension-is-set-to-gz
• cdb1cb5e4332e771bda9e4d7b9fcdcf40f6cc3e5
• 18-do-not-write-out-asterisk-allele
• 418f5c1084f495d83f5766ce778b9b7aa325d260
• 22-problem-with-grch38-annotation-exac-and-thousand-genomes-missing
• d68d9eded6410ded7afe3befa10cd7693e12b5d2
• ec9c9bf79b4322846923c3d41275ae7d919a2bc8
• 77871e1cd12da141e6954316ec920ee9a021a6bd
• a101789f78d68d493937efa9533cb71efc82de1b
• 32d0325ad1c1caab1d857f71fc1b0f30e13914ac
• 36-properly-annotate-hemizygous-variants
• 975bbd54ff9c2200947b234512ba7a86e2c4883f
• 5e5f6989257acb3b5fbffae2b196f55d684de47a
• 42-release-v022
• a96f5df563e94b868261514863922d7a28971884
• 36-fix-hemizygous
• 6562fe044913cac21e7cfa304f93f270c3b3cc06
• a0f449d007abe7355434aeecfde1286118852765
• 14-add-json-column-info-for-additional-annotations
• 41-adjust-output-of-sv-annotation
• a2a75e29b81b8a7ec21fc1e2051c003c9caf7add
• 45-ensure-that-break-end-records-are-written-out-in-paired-fashion
• d40c692d38082a4051260a45587201bb1f5534a2
• 48-release-v023
• f6ec443a377aafba9d5f7d311ec7143bdd930c06
• fd4a6899a720a9d49b93fb5f6e1f06f69fa0e539
• 51-varfish-annotator-self-test-has-wrong-assumptions-about-gnomad_genomes_var
• 5bc36da9f5706f5330c69b0980e06ed75db3f1a4
• 53-do-not-write-out-unaffectedaffectedbackgroundcarriers-into-info-field-for-structural-variants-tsv
• b6c2c714f92632dfcebf1c5855245e8f80254c4d
• 8127ceac7399bc04acd7ba5c6ff19f46473c8072
• a43edf4f3822fdd442fbb1a78f11e67663d18f37
• 23e3451d7e00593ce47002b91f3655acb2a2b267
• 56-sanity-check-for-grch37-gnomad-genomes-and-chromosome-y-is-wrong
• ead63ca2b68f6050c9b0b76b18524bb089803ef4
• 432da619ca11e827fcdf92c678dfcd9495ef1726
• 58-release-v025
• 3272feab567718200b5afd5ae45c2dfe10ad5bed
• 7245030b4ceeb2dc6dd5dc07718c129814f55600
• 61-add-systemend-to-end-tests-for-varfish-annotator
• 678d1f3255d41dcf274ed0d4a1555a1110a51183
• cf8692fad61b32fe05c7198d728eaa7a9f71c1f0
• 63ed09f9b0f0dab5be1526fdb236b07cdb185320
• be9e6fc020716ce940eaa46cf3bce5802eb9d76d
• bf72fbc25f3c911dd3107108bde242a5e88a651e
• c6384148752268d499a815cd757427be24a6d870
• dbb14bc3652714bc35d379be11a655d7c512de78
• 63-increase-test-coverage
• 146f7cfebf961d2f33c5c9b029d24cd99ba08a29
• 008a9148cbd7e12b76a500ce7bf3f18deeaa627c
• 3a404cd69442e716314a813be2832685708267c0
• 65-run-on-real-caller-output-in-tests
• 22134f8d48afcd431f06e8c30ce0090a30e4b412
• ecc47c32e3ed7a52955692f162263b031e34a170
• 6591db1b4e73b386c1901368c0daa185fd5f216a
• 67-remove-explicit-support-for-sv2
• cf43a99ce545a8422d195dbe7b89bbab7797af0c
• 68-add-explicit-support-for-sv-calling-tools
• 822f55d527090905b092448714767603c50cb448
• 3df3e02b9e7a99d72ed7a008872b750f9f4861a1
• f541a6ea86cd8ce2b7385d80cb4dac42fe99867d
• 9f0c441a0fc05eb75c561595846efbcb8cc19146
• 74ebaed45a22c19f065dd368815738ceb5f902bf
• c45bf71c08b0e65f01e417bc556d0d4a2e943e70
• bee3abbe50925b17fad3a654b93b400aa557bd35
• d45f9da23d6cc62e93a9f9e0c4523c0e798bf427
• e99b185631584fbda6c81d34b5fb2e2ec6c38bf1
• 565f7a8f9c0ffa8a18ba5d14df7049458a032583
• 76ad8a3787411795ee9ae471679175d64719bf62
• 74-write-out-deldup-from-dragen-cnv-calling-as-svtype=deldup
• 5572c3fe70f7a6543b1d15b6d0a349162ac63f4a
• 74cda79bf0e8bd1cb6bef41c49e0eed9ba70ee60
• 2b9deccc843239139994e38af95b8773a8734b5f
• b064787bff873fefc28f115e9ed0988b125783e1
• 37f72eb41b22614bc8ef32fa907f7435d0a47b02
• 73-implement-support-for-annotating-depth-of-coverage-and-mapping-quality-for-cnvs
• 0a67836693b64323f39a5895130289503b192255
• 7dd9e483f01d51c7886b9b866edd9e885509b73a
• 6c160ba9a4e6e235c2f9c95fd0db9795c4a4b5fc
• 3caa6c50ff6ac2e8ab11b99929b99202eaebdabe
• 75-implement-support-for-merging-multiple-vcf-files-in-annotate-svs
• ea75fd685cb3a15e5623062dc9087683bcf9580c
• 4523193bc7df34d225ace3fbae63412d59f24285
• 79-ensure-output-is-always-sorted
• a5398417dd359c671b60e7c099f3dcac2197e0c9
• fc8d378508f1d8103916135914d2ef3401aa4d1b
• f5ae63ecd9dfbc5455599e9b21cb636b298da783
• 81-write-out-sv-callers-as-array
• 215bccec609ba9f5bad8a911e33bdf6af77d8461
• 98923d68155d0d98a6a46f47a5ab24465d906a63
• 6208960acc55486889aefe663ea6336a43ae340c
• 36ffb73c1f9de3b11ecc373bfb80724ed9320087
• 4527c832902dcbcfd24f2120639d73a290fa237d
• 96804416e5eb33add18024ba761ffe91148057ba
• b34947b9faf8380826e355d465697f714c775273
• 85-remove-bnd-with-non-included-target-sequences
• 4bed938e5e2ce3a1b45440e135b01cf1e90de68c
• 84-handle-absent-quality-metrics-for-mt-coming-from-dragen
• fa5ef155810f09adb3815688ac96205bccba7660
• 387673bf99dcfc06a485609c10e51c59c3d04e93
• 3d31bd7fddb0648894a474247de6cfad6b208ede
• 38a2dbaf439a51c54688ac0ad06ee280b49ef0c8
• 88-npe-when-annotating-delly2-files
• 90-implement-release-please
• 76f7ab760c43659f3172b91686c9604646621096
• 51623ae31f6a6d4791856efee5c23a4ec7440981
• 91-make-sure-that-we-can-annotate-melt-vcfs
• 429c171b46318896be33d7fa24d4073d7ac3d892
• 0265689372b715d2764b0fa593983735d076e804
• bdb9e5ae003857c4194fd8dd78efc9563b372adc
• 93-exception-in-thread-main-javalangnumberformatexception-for-input-string-2144
• 34b34fe40b67592d4e3f1c3e34b90dd16cc93703
• d84f510deb54c8b5cfd88e1adccad8dd6405a5c9
• 98d437be05ba429c9046304fddd97ae8befa0ecb
• 95-npe-when-annotating-melt-results
• 9ae167e9c0e7a03b43e7c48723d0867802a3d3b0
• f89c1d261e8d41d5bcca5f3f4a2206356a2cc852
• a90fecc8a8a63fe17396775ac7d3ab12339790df
• c800b8e0bd42c4eb927c48a7dafb8a97bd4f664b
• 2a66fe3c2b9ad44be124f98f41e115c974a68fcf
• f7fbdecd773d0efbf9e554e25e066d85569cb86d
• e8968b943b4ba792f6491b2929fc56adbf320eaa
• 3da0bc37dbe702d3c33711ce3f223974c98c05fa
• 99-problem-with-refalt-normalization-in-vcf
• aa64112c9930ab243f8af4a2f63f6d96437c7ea4
• a51a791739e869378e5c16280e76b00e1b3b41cb
• 4ea69b97f2e93d573c666dc64c979c75bc6ed2b3
• cb8a6ecf2711cb75a7a380fd8dd84e10196d3db9
• 41062c261b40e7a68881e667800b9820a4c8cf67
• chore-common-dot-github-files

Build # #60

Build Type

push

Committed by holtgrewe

Commit Message

Adding self-tests for annotation (#27)

Closes: #27
Related-Issue: #27
Projected-Results-Impact: none

Run Details

1330 of 1897 relevant lines covered (70.11%)

0.7 hits per line