bihealth / sodar-server

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• dev
• 1.2.3
• 1.2.4
• 1.2.5
• 1.2.6
• 1.2.7
• 1.2.8
• 1.2.9
• 1073-update-checksum-error-status
• 1202-add-zone-move-extra-data
• 1267-enable-landing-zone-updating
• 1267-landing-zone-updating
• 1295-display-irods-file-count-in-sheet-overview-tab
• 1296-add-create-tag-for-sheet-versions
• 1308-update-zone-status-messages
• 1310-add-sheet-sync-validation
• 1339-add-davrods-link-to-irods-deletion-request-list-items
• 1340-add-batch-acceptingrejecting-for-irods-delete-requests
• 1398-create-and-use-constants-for-landing-zone-status-types
• 1439-add-ticket-host-restriction
• 1454-update-assay-no-plugin-display
• 1458-fix-zone-failed-status-not-set
• 1501-update-empty-assay-coll-display
• 1512-update-zone-locked-controls
• 1524-add-germline-igv-cache-support
• 1525-optimize-germline-path-queries
• 1534-add-zone-admin-reset
• 1588-add-irods-delete-request-management-to-samplesheets-rest-api
• 1588-irods-request-management-to-samplesheets-rest-api
• 1592-add-irods4.3-support
• 1607-enable-landing-zone-controls-for-superuser-if-zone-is-locked
• 1619-add-rest-api-endpoint-to-retrieve-project-irods-file-list
• 1631-update-url-patterns-to-use-path
• 1638-cleanup
• 1638-prepare
• 1639-add-setting-to-disable-study-table-cache-in-development
• 1653-unify-flow-username
• 1661-add-library-name-mgmt
• 1684-query-for-ui-landing-zone-status-in-batch
• 1730-move-irods-list-view
• 1749-update-irods-request-ui-path
• 1752-crash-in-zonestatusretrieveajaxview-views-from-getlist
• 1757-add-template-boolean
• 1765-fix-docker-build
• 1769-update-nodejs-install
• 1776-update-sheet-title-display
• 1811-upgrade
• 1811-upgrade-werkzeug
• 1812-update-igv-genome
• 1815-upgrade-ci-irods
• 1818-add-bom-support
• 1826-cleanup
• 1827-add-assay-detail-modal
• 1831-fix-get-version
• 1846-refactor-landing-zone-move
• 1847-update-rest-api-lock-errors
• 1850-update-validate-lock
• 1858-fix-legacy-delete-requests
• 1861-cleanup
• 1869-add-zone-assay-shortcuts
• 1881-add-zone-file-list-pagination
• 1881-update-zone-irods-modal
• 1882-refactor-zone-coll-queries
• 1885-add-study-plugin-override
• 1888-fix-zone-move-path
• 1896-fix-isa-template-slash
• 1899-upgrade-sodar-core
• 1903-fix-and-refactor-irods-stats
• 1904-fix-process-name-handling
• 1905-fix-zone-create-crash
• 1906-fix-setaccesstask-exceptions
• 1908-add-cram-support
• 1909-fix-finished-zone-lock-status
• 1912-add-data-request-extra-data
• 1921-fix-germline-family-col-check
• 1922-upgrade-sodar-core
• 1922-upgrade-sodar-core-fix-ci
• 1923-add-igv-omit-glob-pattern
• 1933-cleanup
• 1934-add-zone-owner-access
• 1936-update-api-versioning
• 1938-fix-readme-badges
• 1939-add-email-opt-out
• 1941-add-checksum-retry
• 1944-upgrade-irods-client
• 1948-update-zone-role-modify-lock
• 1949-fix-irods-tooltips
• 1951-add-openapi-support
• 1955-fix-python-client-crash
• 1955-rollback-python-irodsclient
• 1957-add-update-row-index
• 1958-fix-landing-zone-irods-name-exception
• 1959-upgrade-deps
• 1959-upgrade-sodar-core
• 1959-upgrade-sodar-core-wip
• 1961-add-template-upload-app
• 1963-add-shortcut-modal-omit-patterns
• 1967-squash-migrations
• 1968-add-row-link-display-override
• 1970-update-lock-fail-logging
• 1972-upgrade-vue-app-deps
• 1976-add-django-axes-support
• 1978-fix-e721
• 1980-add-assay-app-tests
• 1982-fix-generic-plugin
• 1985-cleanup
• 1986-upgrade-deps
• 1991-cleanup
• 1993-remove-sodar-api-settings
• 1994-add-api-pagination
• 1999-add-oidc-user-token-auth
• 2001-refactor-tests
• 2004-fix-docker
• 2007-upgrade-irods-client
• 2009-remove-irods42-support
• 2010-update-timeline-constants
• 2011-update-overview
• 2016-refactor-get-assay-path
• 2018-update-docs
• 2023-remove-ci-workaround
• 2023-upgrade-irods-client
• 2024-add-zone-progress-display
• 2027-fix-irods-request-tl-status
• 2032-update-md5-case
• 2033-upgrade-altamisa
• 2036-update-api-zone-create
• 2038-add-get-object-checksum
• 2040-update-file-list-api-view
• 2048-add-lock-status-api
• 2051-update-docs
• 2051-update-spectacular
• 2051-upgrade-sodar-core
• 2052-remove-squashed-migrations
• 2057-update-rest-api-user
• 2058-fix-irods-data-request-accept
• 206-fix-missing-referer-mixin
• 2062-refactor-irods-request-tests
• 2063-upgrade-irods
• 2064-add-zone-upload-prohibit
• 2066-fix-landing-zone-create
• 2067-upgrade-ci-runner
• 2067-upgrade-dev-platform
• 2068-upgrade-deps
• 2068-upgrade-python-irodsclient
• 2068-upgrade-sodar-core
• 2071-fix-sheet-editor
• 2078-add-file-exists-restrict
• 2079-upgrade-irods-client
• 2084-cleanup
• 2093-refactor-task-paths-args
• 2095-upgrade-sodar-core
• 2096-fix-zone-delete-timeline
• 2100-remove-enable-irods-setting
• 2102-refactor-tests
• 2108-upgrade-sodar-core
• 2109-add-irods-owner-group-mgmt
• 2110-remove-edit-config-min-role
• 2114-add-inactive-user-support
• 2115-remove-unused-flows
• 2120-limit-parser-warnings
• 2121-rename-get-group-name
• 2127-update-zone-title-column
• 2131-fix-checksum-retry-fail
• 2133-add-project-sync-ticket-update
• 2134-refactor-issue-ticket
• 2138-add-ticket-data-obj-support
• 2146-add-project-lock-alert
• 2148-add-zone-create-limit
• 2149-add-sha256-support
• 2150-add-zone-validate-limit
• 2156-upgrade-sodar-core
• 2157-add-taskflow-submit-user
• 2160-add-irods-coll-stats-retrieval
• 2167-update-ui-tests
• 2169-add-zone-file-list-ui-tests
• 2173-add-zone-settings-display
• 2174-add-zone-settings-api-view
• 2177-cleanup
• 2181-update-zone-file-list-refresh
• 2185-cleanup
• 2186-fix-zone-move-progress-counter
• 2187-upgrade-sodar-core
• 2189-add-zone-progress-pct
• 2196-add-type-hints
• 2197-update-format-strings
• 2199-add-zone-contributor-restrict
• 2200-add-viewer-role-support
• 2202-update-public-access
• 2205-add-alert-notify-settings
• 2207-fix-irodsorphans-nested-paths
• 2213-add-category-stats
• 2215-update-irods-acl
• 2216-add-checkaccess-command
• 2217-add-unwanted-acl-removal
• 2218-refactor-irods-path-handling
• 2219-upgrade-deps
• 2229-upgrade-node
• 2232-upgrade-deps
• 2232-upgrade-sodar-core-1-2-4
• 2233-update-views-for-access-block
• 2236-fix-irods-dir-modal-filter
• 2243-fix-guest-irods-stats
• 2244-fix-sheet-dropdown-guest-access
• 2245-refactor-public-access-checks
• 2247-add-sheet-sync-enable
• 2248-cleanup
• 2249-remove-django-cprofile-middleware
• 2250-remove-ci-local-deps
• 2254-add-cache-update-task
• 2257-update-zone-move-admin-access
• 2258-refactor-taskflowbackend-constants
• 2260-remove-zone-access-cleanup
• 2265-add-table-detail-modal-study-support
• 2276-upgrade-irods
• 2278-fix-assay-plugin-coll-acls
• 2281-update-test-config-values
• 2283-add-irodsorphans-project-arg
• 2284-add-zone-irods-modal-coll-toggle
• 2286-refactor-landingzones-jquery-vars
• 2291-add-zone-file-list-api-view
• 2305-update-ui-test-headless-mode
• 2307-add-zone-delete-tl-data
• 2309-add-zone-move-verification
• 2310-upgrade-redis
• 2318-update-app-alert-formatting
• 2323-update-trigger-zone-move
• 2326-add-zone-verify-retry
• 2334-upgrade-sodar-core
• 2338-add-zone-verify-app-setting
• 2339-fix-landingzone-migrations
• 2344-add-r-api-examples
• 2346-fix-zone-verify-status-update
• 2349-cleanup
• 2350-remove-wheel-dependency
• 2351-update-sentry
• 2361-upgrade-sodar-core
• 2363-add-v125-fixes
• 2363-add-v128-fixes
• 2363-patch-v129-fixes
• 2365-fix-zone-status-truncating
• 2371-fix-sheet-sync-disable
• 2376-fix-zone-form-assay-dropdown
• 2378-fix-owl-import-logging
• 2380-fix-sha256-checksum-listing
• 2381-refactor-get-objs-recursively
• 2382-cleanup
• 2389-add-vue3-tests
• 2390-add-vue3-editor
• 2397-upgrade-python-docker
• 2416-fix-zone-notify
• 2427-fix-vue2-app-button-layout
• 2428-replace-black-with-ruff
• 2439-add-germline-vcf-cache-search
• 2441-cleanup
• 2444-upgrade-node
• 2457-add-vue3-column-config
• 2460-fix-ticket-delete
• 2464-fix-igv-linking
• 2465-fix-igv-shortcut-queries
• 994-add-new-vue-app
• 994-add-vue3-app
• Display-study-and-assay-plugin-icons
• cleanup/0.13.0
• cleanup/0.13.3
• cyberduck
• davrods-link-and-irods-batch-accept
• dev1.0
• dev1.1
• dev1.2
• docs-irodsbackend
• docs/api-example
• dynamic_plugin
• feature/archive
• feature/ext-link-config
• feature/irods-path-validation
• feature/irods-tickets
• feature/isa-template-req
• feature/render-cache
• fix-docker
• fix/ci
• fix/docs
• fix/file-input
• fix/lock-issues
• irods-access-tickets
• irods-access-tickets-api-views
• irods-delete-request
• irods-delete-request-rest-api-views
• irods-rest-api-configurations-info
• landingzone
• landingzone-post-status-update
• landingzone-update-view
• landingzones-nothing-to-do-check
• landingzones-status-update
• main
• ms_meta
• output-irodsadmin-command-results
• path-clipboard-copy-button-landing-zone-irods-collection-list
• refactor/germline-cache
• refactor/irods-conns
• refactor/irods-data-request
• refactor/study-render
• refactor/taskflow-tests
• refs/heads/davrods-link-and-irods-batch-accept
• refs/heads/upgrade/core0.13
• refs/tags/v0.12.0
• refs/tags/v0.12.1
• refs/tags/v0.13.0
• refs/tags/v0.13.2
• refs/tags/v0.13.3
• refs/tags/v0.13.4
• refs/tags/v0.14.0
• refs/tags/v0.14.1
• refs/tags/v0.14.2
• refs/tags/v0.15.0
• refs/tags/v0.15.1
• study-table-cache-setting
• update/coverage
• update/docs
• update/igv-genome
• update/taskflow-tests
• upgrade/core-0.12
• upgrade/core0.13
• v1.0.0
• v1.0.1
• v1.1.0
• v1.1.1
• v1.1.2
• v1.1.3
• v1.1.4
• v1.2.0
• v1.2.1
• v1.2.2
• v1.2.3
• v1.2.4
• v1.2.5
• v1.2.6
• v1.2.7
• v1.2.8
• v1.2.9

Build # 25112648979

Build Type

push

github

Committed by mikkonie

Commit Message

add v1.2.9 fixes (#2363, #2460, #2464, #2465)

Coverage Stats

69 of 72 new or added lines in 5 files covered. (95.83%)

39448 of 41264 relevant lines covered (95.6%)

0.96 hits per line