bardin-lab / readtagger

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• shm_dir
• add_support_for_files_with_missing_reads
• allow_multiple_readtagger_input_files
• blast_io
• blast_work
• bugfixes_multithreading
• cluster_refinement
• debug_0.3.25
• debug_highmem
• dep_update
• dovetailing_debug
• fix_add_mate
• fix_build
• fix_file_seeking
• fix_qual_to_string
• fix_source_path_annotate_path
• fix_viral_integration_finding
• genotyping
• genotyping_improvements
• improve_false_positives
• improve_filtering_pipeline
• long_read_detection
• master
• more_accurate_support_quantification
• multi_sample_comparisons
• nref_fix
• parallelize_readtagger
• plot_coverage
• pyup-update-bcbio-gff-0.6.4-to-0.6.6
• pyup-update-biopython-1.68-to-1.69
• pyup-update-biopython-1.69-to-1.70
• pyup-update-biopython-1.70-to-1.71
• pyup-update-biopython-1.70-to-1.72
• pyup-update-biopython-1.73-to-1.74
• pyup-update-biopython-1.74-to-1.75
• pyup-update-cached_property-1.3.0-to-1.3.1
• pyup-update-cached_property-1.3.1-to-1.4.0
• pyup-update-cached_property-1.4.0-to-1.4.2
• pyup-update-cached_property-1.4.0-to-1.4.3
• pyup-update-cached_property-1.4.0-to-1.5.1
• pyup-update-click-6.7-to-7.0
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• pyup-update-flake8_docstrings-1.1.0-to-1.3.0
• pyup-update-flake8_docstrings-1.3.0-to-1.3.1
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• pyup-update-planemo-0.48.0-to-0.53.0
• pyup-update-planemo-0.48.0-to-0.54.0
• pyup-update-planemo-0.48.0-to-0.55.0
• pyup-update-planemo-0.58.1-to-0.58.2
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• pyup-update-planemo-0.58.2-to-0.60.0
• pyup-update-planemo-0.58.2-to-0.61.0
• pyup-update-planemo-0.60.0-to-0.61.0
• pyup-update-planemo-0.61.0-to-0.62.0
• pyup-update-planemo-0.61.0-to-0.62.1
• pyup-update-pydocstyle-1.1.1-to-2.0.0
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• pyup-update-pydocstyle-4.0.1-to-5.0.2
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• pyup-update-pysam-0.11.1-to-0.11.2.1
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• pyup-update-pysam-0.14-to-0.14.1
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• pyup-update-pysam-0.14.1-to-0.15.1
• pyup-update-pysam-0.15.1-to-0.15.2
• pyup-update-pysam-0.15.2-to-0.15.3
• pyup-update-pytest-3.0.6-to-3.0.7
• pyup-update-pytest-3.0.7-to-3.1.0
• pyup-update-pytest-3.0.7-to-3.1.1
• pyup-update-pytest-3.0.7-to-3.1.2
• pyup-update-pytest-3.1.2-to-3.1.3
• pyup-update-pytest-3.1.2-to-3.2.0
• pyup-update-pytest-3.2.0-to-3.2.1
• pyup-update-pytest-3.2.0-to-3.2.2
• pyup-update-pytest-3.2.2-to-3.2.3
• pyup-update-pytest-3.2.3-to-3.2.4
• pyup-update-pytest-3.2.4-to-3.2.5
• pyup-update-pytest-3.2.5-to-3.3.0
• pyup-update-pytest-3.2.5-to-3.3.1
• pyup-update-pytest-3.2.5-to-3.3.2
• pyup-update-pytest-3.2.5-to-3.4.0
• pyup-update-pytest-3.2.5-to-3.4.1
• pyup-update-pytest-3.4.1-to-3.4.2
• pyup-update-pytest-3.4.1-to-3.5.0
• pyup-update-pytest-3.4.1-to-3.5.1
• pyup-update-pytest-3.4.1-to-3.6.0
• pyup-update-pytest-3.4.1-to-3.6.1
• pyup-update-pytest-3.4.1-to-3.6.2
• pyup-update-pytest-3.4.1-to-3.6.3
• pyup-update-pytest-3.4.1-to-3.6.4
• pyup-update-pytest-3.4.1-to-3.7.0
• pyup-update-pytest-3.4.1-to-3.7.1
• pyup-update-pytest-3.4.1-to-3.7.2
• pyup-update-pytest-3.4.1-to-3.7.4
• pyup-update-pytest-3.4.1-to-3.8.0
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• pyup-update-pytest-3.4.1-to-3.8.2
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• pyup-update-pytest-4.1.1-to-4.3.1
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• pyup-update-pytest-4.3.1-to-4.4.1
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• pyup-update-pytest-4.3.1-to-4.5.0
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• pyup-update-pytest-4.3.1-to-4.6.1
• pyup-update-pytest-4.3.1-to-4.6.2
• pyup-update-pytest-4.3.1-to-4.6.3
• pyup-update-pytest-4.3.1-to-5.0.0
• pyup-update-pytest-4.3.1-to-5.0.1
• pyup-update-pytest-4.3.1-to-5.1.1
• pyup-update-pytest-4.3.1-to-5.1.2
• pyup-update-pytest-4.3.1-to-5.1.3
• pyup-update-pytest-4.3.1-to-5.2.0
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• pyup-update-pytest-cov-2.4.0-to-2.5.0
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• pyup-update-pytest-cov-2.6.1-to-2.7.1
• pyup-update-pytest-cov-2.7.1-to-2.8.1
• pyup-update-pytest-datadir-0.2.0-to-1.0.0
• pyup-update-pytest-datadir-0.2.0-to-1.0.1
• pyup-update-pytest-flake8-0.8.1-to-0.9.1
• pyup-update-pytest-flake8-0.9.1-to-1.0.0
• pyup-update-pytest-mock-1.10.0-to-1.10.2
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• simplify_readtagger
• softclip_cluster_fix
• sort_by_readname
• temp_files_cleanup
• test_fasta_out
• testing_improvements
• timeout
• tsd_and_assembly
• v0.1.10
• v0.1.11
• v0.1.12
• v0.1.13
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• v0.3.3
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• v0.3.5
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• v0.4.17
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• v0.4.19
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• v0.4.20
• v0.4.3
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• v0.5.1
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• v0.5.20
• v0.5.21
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• v0.5.23
• v0.5.3
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• v0.5.7
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• v0.5.9

Build # 281

Build Type

push

travis-ci

Committed by mvdbeek

Commit Message

Add possibility to passs SHM_DIR via environmental variable

Run Details

1511 of 1640 relevant lines covered (92.13%)

1.83 hits per line