bardin-lab / readtagger

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LAST BUILD ON BRANCH genotyping_improvements

branch: genotyping_improvements

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• genotyping_improvements
• add_support_for_files_with_missing_reads
• allow_multiple_readtagger_input_files
• blast_io
• blast_work
• bugfixes_multithreading
• cluster_refinement
• debug_0.3.25
• debug_highmem
• dep_update
• dovetailing_debug
• fix_add_mate
• fix_build
• fix_file_seeking
• fix_qual_to_string
• fix_source_path_annotate_path
• fix_viral_integration_finding
• genotyping
• improve_false_positives
• improve_filtering_pipeline
• long_read_detection
• master
• more_accurate_support_quantification
• multi_sample_comparisons
• nref_fix
• parallelize_readtagger
• plot_coverage
• pyup-update-bcbio-gff-0.6.4-to-0.6.6
• pyup-update-biopython-1.68-to-1.69
• pyup-update-biopython-1.69-to-1.70
• pyup-update-biopython-1.70-to-1.71
• pyup-update-biopython-1.70-to-1.72
• pyup-update-biopython-1.73-to-1.74
• pyup-update-biopython-1.74-to-1.75
• pyup-update-cached_property-1.3.0-to-1.3.1
• pyup-update-cached_property-1.3.1-to-1.4.0
• pyup-update-cached_property-1.4.0-to-1.4.2
• pyup-update-cached_property-1.4.0-to-1.4.3
• pyup-update-cached_property-1.4.0-to-1.5.1
• pyup-update-click-6.7-to-7.0
• pyup-update-click-7.0-to-7.1.1
• pyup-update-contextlib2-0.5.4-to-0.5.5
• pyup-update-contextlib2-0.5.5-to-0.6.0
• pyup-update-contextlib2-0.5.5-to-0.6.0.post1
• pyup-update-cookiecutter-1.5.1-to-1.6.0
• pyup-update-edlib-1.2.3-to-1.2.3.post1
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• pyup-update-flake8_docstrings-1.3.0-to-1.3.1
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• pyup-update-pytest-3.2.5-to-3.4.1
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• pyup-update-pytest-3.4.1-to-3.6.0
• pyup-update-pytest-3.4.1-to-3.6.1
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• pyup-update-pytest-3.4.1-to-3.6.3
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• pyup-update-pytest-3.4.1-to-3.7.0
• pyup-update-pytest-3.4.1-to-3.7.1
• pyup-update-pytest-3.4.1-to-3.7.2
• pyup-update-pytest-3.4.1-to-3.7.4
• pyup-update-pytest-3.4.1-to-3.8.0
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• pyup-update-pytest-4.1.1-to-4.3.1
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• pyup-update-pytest-4.3.1-to-4.4.1
• pyup-update-pytest-4.3.1-to-4.4.2
• pyup-update-pytest-4.3.1-to-4.5.0
• pyup-update-pytest-4.3.1-to-4.6.0
• pyup-update-pytest-4.3.1-to-4.6.1
• pyup-update-pytest-4.3.1-to-4.6.2
• pyup-update-pytest-4.3.1-to-4.6.3
• pyup-update-pytest-4.3.1-to-5.0.0
• pyup-update-pytest-4.3.1-to-5.0.1
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• pyup-update-pytest-4.3.1-to-5.1.3
• pyup-update-pytest-4.3.1-to-5.2.0
• pyup-update-pytest-4.3.1-to-5.2.1
• pyup-update-pytest-4.3.1-to-5.2.2
• pyup-update-pytest-5.2.2-to-5.2.3
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• pyup-update-pytest-5.2.2-to-5.3.1
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• pyup-update-pytest-5.2.2-to-5.3.4
• pyup-update-pytest-5.2.2-to-5.3.5
• pyup-update-pytest-cov-2.4.0-to-2.5.0
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• pyup-update-pytest-cov-2.6.1-to-2.7.1
• pyup-update-pytest-cov-2.7.1-to-2.8.1
• pyup-update-pytest-datadir-0.2.0-to-1.0.0
• pyup-update-pytest-datadir-0.2.0-to-1.0.1
• pyup-update-pytest-flake8-0.8.1-to-0.9.1
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• pyup-update-pytest-mock-1.10.0-to-1.10.2
• pyup-update-pytest-mock-1.10.2-to-1.10.3
• pyup-update-pytest-mock-1.10.2-to-1.10.4
• pyup-update-pytest-mock-1.10.4-to-1.11.0
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• shm_dir
• simplify_readtagger
• softclip_cluster_fix
• sort_by_readname
• temp_files_cleanup
• test_fasta_out
• testing_improvements
• timeout
• tsd_and_assembly
• v0.1.10
• v0.1.11
• v0.1.12
• v0.1.13
• v0.1.8
• v0.1.9
• v0.2.0
• v0.3.0
• v0.3.1
• v0.3.10
• v0.3.11
• v0.3.12
• v0.3.13
• v0.3.14
• v0.3.15
• v0.3.16
• v0.3.17
• v0.3.18
• v0.3.19
• v0.3.2
• v0.3.20
• v0.3.21
• v0.3.22
• v0.3.23
• v0.3.24
• v0.3.25
• v0.3.3
• v0.3.4
• v0.3.5
• v0.3.6
• v0.3.7
• v0.3.9
• v0.4.0
• v0.4.1
• v0.4.10
• v0.4.11
• v0.4.12
• v0.4.13
• v0.4.14
• v0.4.15
• v0.4.16
• v0.4.17
• v0.4.18
• v0.4.19
• v0.4.2
• v0.4.20
• v0.4.3
• v0.4.4
• v0.4.5
• v0.4.6
• v0.4.7
• v0.4.8
• v0.4.9
• v0.5.0
• v0.5.1
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• v0.5.11
• v0.5.12
• v0.5.13
• v0.5.14
• v0.5.15
• v0.5.16
• v0.5.17
• v0.5.19
• v0.5.2
• v0.5.20
• v0.5.21
• v0.5.22
• v0.5.23
• v0.5.3
• v0.5.4
• v0.5.5
• v0.5.6
• v0.5.7
• v0.5.8
• v0.5.9

Build # 158

Build Type

push

travis-ci

Committed by mvdbeek

Commit Message

Prepare HISTORY.rst for v0.3.11 release

Run Details

1085 of 1127 relevant lines covered (96.27%)

1.92 hits per line