angelolab / toffy

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• scan_fix
• 3b_and_3d_documentation
• MPH_description
• MPH_histograms
• MPH_plots
• adjust_min_tma
• ark_stitching_link
• barium_comp
• bug-112-moly-skip
• callback-building-speedup
• canceled_run
• check_voltage
• convert_utf
• copy_files_error
• copy_notebooks
• coreg_path_fix
• coreg_save
• dependencies/scikitlearn
• detailed_panel_description
• ds_store_ignore
• empty_json
• enforce_channels
• extract_bin_notebook
• find_moly_fovs
• fix_release_environment
• float32_stitching
• fov_process_order
• gh-readonly-queue/main/pr-352-a123784f38f5d1aa295bfb0178aec8b8d5b90825
• gh-readonly-queue/main/pr-371-bed892600572808cd5b1b9d2c184d728622df668
• gh-readonly-queue/main/pr-372-eb302e697633611e1bf8af2b5c197ef8735da7fc
• gh-readonly-queue/main/pr-383-46858ac18a4ea05f5b9284fe80c6caa4186c2717
• gh-readonly-queue/main/pr-385-97e16c84d7de7f7e96f02b41c4a1fe8d5d258049
• gh-readonly-queue/main/pr-390-25f1c6d673af4163c072e43e9703ccc9a8c6a7e3
• gh-readonly-queue/main/pr-408-e174c13694cf6e0c0ad34891a7bd716f63f2209e
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• gh-readonly-queue/main/pr-426-83cebfba0ac5330e3ec3c015659cc5ed6e7de4dd
• gh-readonly-queue/main/pr-427-9cab3e04704f3b6cf7335b457ae33ca83a5b2b40
• gh-readonly-queue/main/pr-429-70bf5faaf2d3827226dd5ed5c8e92c16e8f88540
• git_install_instructions
• github-actions-from-template
• image_stitching
• implement_json_helper_funcs
• import_error
• improve-watcher-tests
• install-instructions
• inter_callback
• json.helper.func
• json_helper_functions
• list_moly_json_encoding
• load_panel_cols
• main
• max_img_size_subdir
• moly_points_option
• mph_norm_workflow
• nb1_improvements
• nb4a_improvements
• next_release_v0.1.1
• no-contrast-check
• norm_batch
• normalization_checks
• normalize_arg_fix
• normalize_doc
• normalize_dtype
• notebook_cleaning
• optical_img_mibiscope_png_doc
• optimization/compressed_tiffs
• panel_cols
• panel_conversion
• pin_ark
• pipeline_flowchart
• pipeline_flowchart_3e
• polish-watcher
• pulse_heights_callback
• python_version_docs
• qc_doc
• qc_metrics_violin_plots
• qc_qol
• qc_watch
• readme_dir_structure
• readme_discussion
• readme_flowchart
• reformat_run_dirs
• releases/v0.2.3
• releases/v0.3.1
• releases/v0.3.2
• releases/v0.3.3
• remove_mibitracker
• rename_fov_folders
• rename_warning
• rosetta_bonus
• rosetta_chan_39
• rosetta_dtype
• rosetta_files
• rosetta_folder
• rosetta_ignore_stitched_folder
• rosetta_mat_path
• rosetta_matrix
• rosetta_modifications
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• rosetta_simplification
• rosetta_stitching_fix
• rosetta_v2_add
• rosetta_workflow
• run-callbacks
• run_metrics_saving
• small_fixes
• split_run_file
• stitch_by_shape
• stitch_no_run_file
• streak-detection
• streak_parameter_adjustments
• sync_package_updates_with_ark
• tempfile_error
• tiled_region_name
• tiled_region_overlay
• time_axis
• tma_doc
• tma_dup
• tma_no_moly
• tma_oob_check
• tmi/image_utils
• tmi/notebooks
• tmi/utils
• tmi_for_env
• toffy_notebook_fixes
• toffy_setup_video_fix
• toffy_workflow_description
• update_QC
• update_artifact_vers
• update_default_rosetta
• updated_run_file
• v0.1.0
• v0.1.1
• voltage_skip_empty
• vscode-git-ignore
• watcher
• watcher-chaining
• watcher_docs
• watcher_hidden_files
• watcher_missing_run
• workshop_links
• zero_panel

Build # 28552229729

Build Type

Pull #494

github

Committed by web-flow

Commit Message

Merge 2cda3d64f into c04ba37e3

Pull Request Pull Request #494: Handle updated `scanCount` -> `scans` key in new JSON run file

Coverage Stats

1437 of 1564 branches covered (91.88%)

Branch coverage included in aggregate %.

8 of 8 new or added lines in 3 files covered. (100.0%)

2746 of 2980 relevant lines covered (92.15%)

0.92 hits per line