angelolab / segmentation
81%

DEFAULT BRANCH: master
Repo Added
Files 15
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH master
branch: master
CHANGE BRANCH
x

Relevant lines Covered
1160 RELEVANT LINES 938 COVERED LINES
0.81 HITS PER LINE
Source Files on master
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1017 master Closenum speedup (#163) * compute_close_cell_num_random speedup * removed redundancy from compute_close_cell_num_random and corrected other calls * refactored close_cell_num computation * forced mark1poslables to ints * corrected enum... push web-flow travis-ci-com pending completion  
1014 master Extending Signal Extraction (#160) * Add a basic TODO to complete for signal extraction techniques * Add function stubs for ones to implement * Add signal extraction functions desired * Major fixes on spatial data generation suite and si... push web-flow travis-ci-com pending completion  
998 master Dimensionality reduction (#159) * initial commit * initial commit * added reduction function * added test function * added umap-learn * fixed whitespace and semicolon * updated to leave cell_data unchanged * adjusted whitespa... push web-flow travis-ci-com pending completion  
987 master Create issue templates (#162) * Create issue templates * remove duplicate template * Create help_wanted issue template * Rename feature_request.md to help_wanted.md push web-flow travis-ci-com pending completion  
969 master Plotting functions (#119) * Added cell visualization functions * Update visualize_test.py * Update visualize.py * Update visualize.py * Update visualize_test.py * Commiting local changes * fixed testing the visualize functions ... push web-flow travis-ci-com pending completion  
938 master Synthetic spatial data generation: Part 2 (channel-based) (#122) * Remove unnecessary comment, mostly for creating a new PR * Reorganize functions so generate_random_cell_shapes can easily integrate with existing code * Add code to generate... push web-flow travis-ci-com pending completion  
935 master io_utils update (#154) * added functions to io_utils * added io_utils functions to data_utils * added io_utils functions to segmentation_utils * enforced substrs as file extensions in data_utils * fixed delimiting problems * fixed ... push web-flow travis-ci-com pending completion  
886 master Abstract Deepcell_Postprocessing.ipynb (#149) * Initial commit of branch to address issue #148 * Abstract generation of expression matrices into function in segmentation_utils.py, and add check to prevent invalid points from being specified ... push web-flow travis-ci-com pending completion  
814 master Readme clarification (#144) * fixed start_docker.sh folder-space issue * clarification for no nuc/mem option * filter out None's just in case :) * updated readme * demolishable scripts * added diff logic to start_docker.sh * rem... push web-flow travis-ci-com pending completion  
797 master neighborhood_analysis (#112) * neighborhood analysis * neighborhood tests * checks * close cell num * closenum fix * fixed neighborhood matrix * another check * again check * recheck * rerecheck * test * finally ... push web-flow travis-ci-com pending completion  
See All Builds (424)