angelolab / segmentation
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Builds Branch Commit Type Ran Committer Via Coverage
1017 master Closenum speedup (#163) * compute_close_cell_num_random speedup * removed redundancy from compute_close_cell_num_random and corrected other calls * refactored close_cell_num computation * forced mark1poslables to ints * corrected enum... push web-flow travis-ci-com pending completion  
1014 master Extending Signal Extraction (#160) * Add a basic TODO to complete for signal extraction techniques * Add function stubs for ones to implement * Add signal extraction functions desired * Major fixes on spatial data generation suite and si... push web-flow travis-ci-com pending completion  
998 master Dimensionality reduction (#159) * initial commit * initial commit * added reduction function * added test function * added umap-learn * fixed whitespace and semicolon * updated to leave cell_data unchanged * adjusted whitespa... push web-flow travis-ci-com pending completion  
987 master Create issue templates (#162) * Create issue templates * remove duplicate template * Create help_wanted issue template * Rename feature_request.md to help_wanted.md push web-flow travis-ci-com pending completion  
969 master Plotting functions (#119) * Added cell visualization functions * Update visualize_test.py * Update visualize.py * Update visualize.py * Update visualize_test.py * Commiting local changes * fixed testing the visualize functions ... push web-flow travis-ci-com pending completion  
938 master Synthetic spatial data generation: Part 2 (channel-based) (#122) * Remove unnecessary comment, mostly for creating a new PR * Reorganize functions so generate_random_cell_shapes can easily integrate with existing code * Add code to generate... push web-flow travis-ci-com pending completion  
935 master io_utils update (#154) * added functions to io_utils * added io_utils functions to data_utils * added io_utils functions to segmentation_utils * enforced substrs as file extensions in data_utils * fixed delimiting problems * fixed ... push web-flow travis-ci-com pending completion  
886 master Abstract Deepcell_Postprocessing.ipynb (#149) * Initial commit of branch to address issue #148 * Abstract generation of expression matrices into function in segmentation_utils.py, and add check to prevent invalid points from being specified ... push web-flow travis-ci-com pending completion  
814 master Readme clarification (#144) * fixed start_docker.sh folder-space issue * clarification for no nuc/mem option * filter out None's just in case :) * updated readme * demolishable scripts * added diff logic to start_docker.sh * rem... push web-flow travis-ci-com pending completion  
797 master neighborhood_analysis (#112) * neighborhood analysis * neighborhood tests * checks * close cell num * closenum fix * fixed neighborhood matrix * another check * again check * recheck * rerecheck * test * finally ... push web-flow travis-ci-com pending completion  
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