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Fix mistaken QPY custom-instructions documentation (#12216) `num_custom_gates` is not actually part of the `CIRCUIT_HEADER` structs in any version of QPY. The number of custom-instruction objects is instead stored as a `uint64_t` inline in the `CUSTOM_DEFINITIONS` part of the file, so separately to the rest of the header. (cherry picked from commit 5dbc0c04c)
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