Neuroinflab / kCSD-python
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ccluri 
Move sKCSD_paper to figures/sKCSD_paper (#29)

* sKCSD support for swc morphologies

* Params improvement

* Small test

* Ploting function for skCSD results, 2D morphology plot improved

* Comment added

* Loader, saver for simulation

* Fix slashes in paths

* Make Python2 and Python3 compatible

* Empty __init__ file

* Add untracked directories

* Tutorial data

* Comments on morphology and electrode positions data format

* Ignore *~ and #*

* Object loading and storing data for sKCSD3D

* Find paths of the morphology, LFP and electrode positions files

* Data for tests

* Test loading morphology

* Load electrode positions

* Load data

* Ball and stick model with 8 electrodes

* Ball and stick model with 16 electrodes

* Ball and stick model with 128 electrodes

* Correct morphology

* Use data loder

* Correct morphology

* Store preprocessed data in data directory

* Correct axes labels in morphology plots

* Fix paths in sKCD3D example

* Add extent

* Calculate kernels for ball and stick

* Fix plotting neurons

* Change pickle to json

* Script for running simulations and different morphologies

* Ignore backup files while loading files for sKCSD

* Fix paths

* Choose which electrode to plot

* Script for generating fig 2

* Load only swc files

* Remove unnecessary prints

* Loop over electrode number

* Save membrane current

* Add tstop

* Fix elctrode distance bug

* Bug fix -- last segment does have a parent

* Loop back using parent information

* Fix setting correct electrode positions

* Make figure

* Wider range for morphology

* Use parent section information to build swc tree

* Fix scaling in sKCSD3D example

* Test if all the sources are distributed within the cell

* Save ids of dendrites connected while enclosing morphology

* Change width of gauss and source number in example

* Fix comparing paths in loadData test
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Source Files on ipynb_tests

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Builds Branch Commit Type Ran Committer Via Coverage
69 ipynb_tests Move sKCSD_paper to figures/sKCSD_paper (#29) * sKCSD support for swc morphologies * Params improvement * Small test * Ploting function for skCSD results, 2D morphology plot improved * Comment added * Loader, saver for simulation ... push ccluri travis-ci pending completion  
68 ipynb_tests Correct LoadData import Pull #29 web-flow travis-ci pending completion  
67 ipynb_tests Address sKCSD issues (#27) * sKCSD support for swc morphologies * Params improvement * Small test * Ploting function for skCSD results, 2D morphology plot improved * Comment added * Loader, saver for simulation * Fix slashes in ... push ccluri travis-ci pending completion  
66 ipynb_tests Change numpy and scipy versions for min_conda to pass tests Pull #27 web-flow travis-ci pending completion  
65 ipynb_tests Lower numpy version Pull #27 web-flow travis-ci pending completion  
64 ipynb_tests Fix bug in test_ball_and_stick_8 Pull #27 web-flow travis-ci pending completion  
27 ipynb_tests investigating relationship between singular values and values of lambda Pull #12 web-flow travis-ci pending completion  
26 ipynb_tests changed names of validation classes Pull #12 web-flow travis-ci pending completion  
25 ipynb_tests handling exceptions Pull #12 web-flow travis-ci pending completion  
24 ipynb_tests tutorial with error maps - first version Pull #12 web-flow travis-ci pending completion  
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