Neuroinflab / kCSD-python / 69
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ccluri 
Move sKCSD_paper to figures/sKCSD_paper (#29)

* sKCSD support for swc morphologies

* Params improvement

* Small test

* Ploting function for skCSD results, 2D morphology plot improved

* Comment added

* Loader, saver for simulation

* Fix slashes in paths

* Make Python2 and Python3 compatible

* Empty __init__ file

* Add untracked directories

* Tutorial data

* Comments on morphology and electrode positions data format

* Ignore *~ and #*

* Object loading and storing data for sKCSD3D

* Find paths of the morphology, LFP and electrode positions files

* Data for tests

* Test loading morphology

* Load electrode positions

* Load data

* Ball and stick model with 8 electrodes

* Ball and stick model with 16 electrodes

* Ball and stick model with 128 electrodes

* Correct morphology

* Use data loder

* Correct morphology

* Store preprocessed data in data directory

* Correct axes labels in morphology plots

* Fix paths in sKCD3D example

* Add extent

* Calculate kernels for ball and stick

* Fix plotting neurons

* Change pickle to json

* Script for running simulations and different morphologies

* Ignore backup files while loading files for sKCSD

* Fix paths

* Choose which electrode to plot

* Script for generating fig 2

* Load only swc files

* Remove unnecessary prints

* Loop over electrode number

* Save membrane current

* Add tstop

* Fix elctrode distance bug

* Bug fix -- last segment does have a parent

* Loop back using parent information

* Fix setting correct electrode positions

* Make figure

* Wider range for morphology

* Use parent section information to build swc tree

* Fix scaling in sKCSD3D example

* Test if all the sources are distributed within the cell

* Save ids of dendrites connected while enclosing morphology

* Change width of gauss and source number in example

* Fix comparing paths in loadData test
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Jobs
ID Job ID Ran Files Coverage
1 69.1 (DISTRIB="conda" PYTHON_VERSION="2.7" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true") 0
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 Travis Job 69.1
2 69.2 (DISTRIB="conda" PYTHON_VERSION="3.5" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true") 0
59.58
 Travis Job 69.2
3 69.3 (DISTRIB="conda_min" PYTHON_VERSION="2.7" SIX_VERSION="1.10.0" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" COVERAGE="true") 0
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 Travis Job 69.3
4 69.4 (DISTRIB="conda_min" PYTHON_VERSION="3.4" SIX_VERSION="1.10.0" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" COVERAGE="true") 0
59.58
 Travis Job 69.4
5 69.5 (DISTRIB="ubuntu" PYTHON_VERSION="2.7" NUMPY_VERSION="1.8.0" SCIPY_VERSION="0.14.0" SIX_VERSION="1.10.0" COVERAGE="true") 0
59.36
 Travis Job 69.5
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