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Ensembl / ensembl-datacheck
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LAST BUILD BRANCH: feature/ncrna_canonic_member_core
DEFAULT BRANCH: master
Repo Added 21 Aug 2018 03:18PM UTC
Files 30
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LAST BUILD ON BRANCH feature/improve_test_coverage
branch: feature/improve_test_coverage
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  • feature/improve_test_coverage
  • 110
  • Adaptive_memory_ENSPROD-4787
  • Compare_previous_version_go
  • DisplayName-with-commas-fix
  • DisplayName-with-commas-fix-release/105
  • DisplayNameFormat_update_105
  • DisplayNameFormat_update_106
  • DisplayNameFormat_update_107
  • DisplayNameFormat_update_main
  • ENSPROD-4980
  • EmailNotify
  • Simple_features_analysis_type
  • TapToJson
  • alphafold_datacheck
  • archive/master
  • attrib_value_update
  • bau/copyright-2022
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  • bau/copyright-2024
  • biomart_dc
  • biomart_dc_fix
  • bug/fix_old_db_uri
  • bug/param_in_analysis
  • bug_fix/embedded_dc_output
  • bug_fix/skip_data_files
  • bug_fix/sundry_minor_fixes
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  • bugfix/compara_div_conditional
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  • bugfix/db_name_format
  • bugfix/display_name_extra_character
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  • bugfix/misc
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  • bugfix/mt_chr_updates
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  • bugfix/multi_coredb_selection
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  • bugfix/release-105-build-clone
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  • bugfix/rename_dc_module
  • bugfix/rr_display_name_format
  • bugfix/schema_patch_sort
  • bugfix/seqlevel_toplevel
  • bugfix/seqregion_synonyms
  • bugfix/server_uri_exceptions
  • bugfix/shared_species
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  • bugfix/species_common_name
  • bugfix/species_id
  • bugfix/sundry_fixes
  • bugfix/synonym_names
  • bugfix/test-update-plants
  • bugfix/test_databases
  • bugfix/test_dbs_and_obsolete_files
  • bugfix/transcript-support-operator
  • bugfix/transcript-support-operator-106
  • bugfix/travis_skip_tests
  • bugfix/typo-adivisory-report
  • bugfix/undef_adaptor_test
  • bugfix/variation
  • bugfix/variation_datachecks
  • bugfix/variation_fk
  • bugfix/xref_fixes
  • bugfix/xref_prefixes_group
  • bugfix/xref_types_critical
  • bugfixes/344-on-release-103
  • bugfixes/344-on-release-104
  • bugfixes/fix-query-check-previous-db
  • canonical_transcript_fix_projection
  • compara/cafe_dc
  • compara_datachecks
  • compara_projected_gene_name
  • compare_previous_version_projected_synonym
  • compare_previous_version_synonyms
  • convert_tap_json
  • copyright-2020
  • copyright-2021
  • datacheck_fixes
  • datacheck_for_description_newline
  • datachecks_for_Xref
  • dnadb_creation
  • duplicate_xref
  • email_notify
  • evidence_free_go
  • feature/CompareSpeciesAlias
  • feature/ENSPROD-7673_division_name_include_in_report
  • feature/ENSPROD_7736_disallow_species_strain_group
  • feature/ENSPROD_7736_disallow_species_strain_group_106
  • feature/add_core_sync_group
  • feature/advisory_dc
  • feature/amonida/dc
  • feature/analysis_and_attribs
  • feature/analysis_db_version
  • feature/ancestral_group
  • feature/ancestral_sequences_name
  • feature/assembly_geneset_change
  • feature/assembly_metakeys
  • feature/better_diag_message
  • feature/biomart_species_metazoa
  • feature/cactus_meta_consistency
  • feature/canonical_member_core
  • feature/ccds_xref
  • feature/check_unique_keys
  • feature/codon_migration
  • feature/collection_db_test
  • feature/collective_advisory_dc_report
  • feature/compara_datachecks
  • feature/compara_schema
  • feature/compare_variation
  • feature/config_file
  • feature/datacheck_groups
  • feature/dc_results_to_es
  • feature/dc_sequence_checksum
  • feature/dependency_module_es
  • feature/desc_group_tidy
  • feature/dupe_xref_advisory
  • feature/ena_format_gff3
  • feature/exon_rank_sequential
  • feature/extend_gene_stats
  • feature/filter_behaviour
  • feature/fix_conflicts
  • feature/fk_prod_db
  • feature/force_multi
  • feature/funcgen_datachecks
  • feature/gene_biotype_timeout
  • feature/gene_datachecks
  • feature/hook_update_index
  • feature/merge_102_to_master
  • feature/merge_103
  • feature/misc_tweaks
  • feature/more_meta_checks
  • feature/more_testing_of_tests
  • feature/multidb
  • feature/mvp
  • feature/mvp-rebase-main
  • feature/mvp_110
  • feature/ncbi_gene_name
  • feature/ncrna_canonic_member_core
  • feature/new_datachecks
  • feature/non_core_dc_pipeline
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  • feature/pipeline_emails
  • feature/pipeline_fixes
  • feature/pipeline_script
  • feature/pipeline_xref_datacheck
  • feature/raise_fail_status
  • feature/remove_stable_id
  • feature/repo_release_versions
  • feature/sample_group
  • feature/sample_text_placeholder
  • feature/schema_datachecks
  • feature/server_uri
  • feature/split_appris_tsl
  • feature/statistics
  • feature/test_db_patch_107
  • feature/test_db_patch_108
  • feature/test_db_patch_109
  • feature/test_db_patch_110
  • feature/test_db_patch_111
  • feature/test_db_patch_112
  • feature/test_db_update
  • feature/test_update
  • feature/testcase_old_uri_array
  • feature/update_cpanfile
  • feature/update_datachecks
  • feature/update_group
  • feature/update_group_script
  • feature/update_test
  • feature/update_test_db
  • feature/updated_datachecks
  • feature/versioned_genes
  • feature/website_packed_status
  • feature/xref_datachecks
  • feature/xref_gene_symbol_transformer
  • features/ENSPROD-7978
  • features/allow-subspecies-for-plants
  • features/alphafold-logicname
  • features/codo-updates
  • features/ep-7119
  • features/ep-7140
  • features/es-no-port
  • features/long-running-dc-group
  • features/perl-5.26
  • features/slurm_112
  • fix/fan_funnel_dc
  • fix/genebuild_anno_metakey
  • fix/genebuild_anno_metakey1
  • fix/genebuild_anno_metakey2
  • fix/metadata-default-main
  • fix_index
  • fix_release_99
  • fix_synteny_sanity
  • fix_travis_slack_credentials
  • fix_view_problem
  • funcgen-dc-cleanup
  • funcgen_updates
  • gene_stable_id_display_xref
  • healthchecks_to_datachecks
  • hotfix/MetaKeyFormat
  • hotfix/check_mt_karyotype
  • hotfix/division_specific_repeatmasking
  • hotfix/gene-servionned-viruses
  • hotfix/repeat_nonvert
  • hotfix/repeatdetector_metakey
  • hotfix/repeatfeature
  • hotfix/repeatmasking_metakeys
  • hotfix/repeatmodeler_meta_key
  • hotfixes/viruses-division
  • jalvarez/mupport_gcf_main
  • jalvarez/support_gcf
  • luca-drf-display-name-format-regex
  • main
  • master
  • mbarba/brc_seqregions
  • mem_update
  • merge-conflicts-108-106
  • merge-release-110
  • merge/release/96
  • merge/release_104
  • merge_release_100
  • merge_release_98
  • merge_release_99
  • merge_release_99_master
  • new_datacheck/db_species_name
  • new_test/AltAllele
  • new_test/ExonRank
  • new_test/ExperimentHasFeatureSet
  • new_test/RegulatoryFeatureIsActive
  • new_test/SampleRegulatoryFeatureExists
  • new_test/SegmentationFileHasBigBed
  • new_test/exon_strand_order
  • new_test/exonsBoundaries
  • new_test/feature_position
  • non_core_dc_pipeline
  • one_karyotype_rank_dc
  • patch-1
  • predicted_xrefs
  • readme-dependencies
  • refseq_peptide_prefix_rw
  • release/100
  • release/101
  • release/102
  • release/103
  • release/104
  • release/105
  • release/106
  • release/107
  • release/108
  • release/109
  • release/110
  • release/111
  • release/96
  • release/97
  • release/98
  • release/99
  • revert-193-assembly_longer
  • revert-229-xref_prefix_fix
  • shared_display_xref
  • skip_human_polymorphic_pseudogenes
  • stable_id_display_xref
  • strain_type_dc
  • sundry_fixes
  • tap_to_json_bug
  • tmp
  • transcript_display_xref_suffix
  • transcript_same_name
  • transcript_same_name_99
  • uniprotkb_diplayxref_ids
  • unreviewed_xrefs
  • update/allow_blanks_core_meta
  • update/check_annotation_source
  • update/gene_biotypes_fix
  • update/gene_symbols_dc
  • update/skip_human_repeats
  • update_db_spec
  • update_test_db
  • update_tests_101
  • valid_display_name_fix
  • vsitnik-display_name_pat_108
  • vsitnik-fix-mt-only-chr
  • vsitnik-patch-1_prokka
  • vsitnik-patch-allowed_disp_name_pat_109
  • vsitnik-patch-allowed_dispnames_107
  • xref_desc_special_char
  • xref_html
  • xref_prefix_fix
  • xref_prefix_update
  • xref_prefixes

pending completion
79

Pull #24

travis-ci

web-flow
Attempted to add tests to check the 'run' method of RunDataChecks module. But couldn't solve the problem of clashing test harnesses, so annotated as TODO for now
Pull Request #24: Feature/improve test coverage

127 of 127 new or added lines in 9 files covered. (100.0%)

1268 of 1358 relevant lines covered (93.37%)

4.87 hits per line

Relevant lines Covered
Build:
Build:
1358 RELEVANT LINES 1268 COVERED LINES
4.87 HITS PER LINE
Source Files on feature/improve_test_coverage
  • List 0
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
79 feature/improve_test_coverage Attempted to add tests to check the 'run' method of RunDataChecks module. But couldn't solve the problem of clashing test harnesses, so annotated as TODO for now Pull #24 05 Oct 2018 11:44AM UTC web-flow travis-ci pending completion  
78 feature/improve_test_coverage Attempted to add tests to check the 'run' method of RunDataChecks module. But couldn't solve the problem of clashing test harnesses, so annotated as TODO for now push 05 Oct 2018 11:18AM UTC james-monkeyshines travis-ci pending completion  
77 feature/improve_test_coverage Ignore Checks directory; our aim is to test the framework, it's not feasible to test all the datachecks. Also quietened the cpan install. push 04 Oct 2018 01:04PM UTC james-monkeyshines travis-ci pending completion  
75 feature/improve_test_coverage Ignore other ensembl repos push 04 Oct 2018 11:35AM UTC james-monkeyshines travis-ci pending completion  
74 feature/improve_test_coverage Ignore Checks directory; our aim is to test the framework, it's not feasible to test all the datachecks. Also quietened the cpan install. push 04 Oct 2018 11:25AM UTC james-monkeyshines travis-ci pending completion  
73 feature/improve_test_coverage This was a bad time to switch off verbosity... push 04 Oct 2018 10:54AM UTC james-monkeyshines travis-ci pending completion  
72 feature/improve_test_coverage Ignore Checks directory; it's simply not feasible to test the tests. Our aim is to test the framework, not all the datachecks. Also quietened the cpan install. push 04 Oct 2018 08:42AM UTC james-monkeyshines travis-ci pending completion  
71 feature/improve_test_coverage Tests for utility methods push 04 Oct 2018 08:34AM UTC james-monkeyshines travis-ci pending completion  
70 feature/improve_test_coverage Make Moose classes immutable; speeds execution in theory, but much of what we're doing is database/file IO, so that's the limiting case, really. Still, it shaves off a bit of execution time for minimal effort. push 03 Oct 2018 08:28AM UTC james-monkeyshines travis-ci pending completion  
69 feature/improve_test_coverage Extend tests to check foreign keys method push 02 Oct 2018 09:44PM UTC james-monkeyshines travis-ci pending completion  
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