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Ensembl / ensembl-datacheck
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master: 99%

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Build:
LAST BUILD BRANCH: feature/ncrna_canonic_member_core
DEFAULT BRANCH: master
Repo Added 21 Aug 2018 03:18PM UTC
Files 30
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LAST BUILD ON BRANCH TapToJson
branch: TapToJson
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  • TapToJson
  • 110
  • Adaptive_memory_ENSPROD-4787
  • Compare_previous_version_go
  • DisplayName-with-commas-fix
  • DisplayName-with-commas-fix-release/105
  • DisplayNameFormat_update_105
  • DisplayNameFormat_update_106
  • DisplayNameFormat_update_107
  • DisplayNameFormat_update_main
  • ENSPROD-4980
  • EmailNotify
  • Simple_features_analysis_type
  • alphafold_datacheck
  • archive/master
  • attrib_value_update
  • bau/copyright-2022
  • bau/copyright-2023
  • bau/copyright-2024
  • biomart_dc
  • biomart_dc_fix
  • bug/fix_old_db_uri
  • bug/param_in_analysis
  • bug_fix/embedded_dc_output
  • bug_fix/skip_data_files
  • bug_fix/sundry_minor_fixes
  • bugfix/advisory_common_name
  • bugfix/ancestral_sequences_species_set
  • bugfix/assorted_fixes
  • bugfix/biomart_branch
  • bugfix/blank_sets
  • bugfix/catch_errors
  • bugfix/checksums_cds
  • bugfix/cmp_end
  • bugfix/compara-species-url
  • bugfix/compara_div_conditional
  • bugfix/config_flock
  • bugfix/controlledtables
  • bugfix/core_db_type
  • bugfix/core_stats_limit
  • bugfix/data-file-division-path
  • bugfix/db_name_format
  • bugfix/display_name_extra_character
  • bugfix/display_xref_exists
  • bugfix/elastic
  • bugfix/email_reports
  • bugfix/empty_output
  • bugfix/end_timestamp
  • bugfix/exon_bounds
  • bugfix/fk_multi_db
  • bugfix/gene_biotype_of
  • bugfix/genebuild_stable_id_prefix
  • bugfix/genebuild_start_date
  • bugfix/genebuild_version_integer
  • bugfix/go_xrefs
  • bugfix/homology_mlss
  • bugfix/insdc_rapid
  • bugfix/karyotype_chr_name
  • bugfix/lrgsequence-checksum
  • bugfix/merge-109
  • bugfix/metakey_url_format
  • bugfix/method_new_genebuild_metakeys
  • bugfix/method_new_genebuild_metakeys1
  • bugfix/misc
  • bugfix/missing_library
  • bugfix/motif_feature_file
  • bugfix/mt_chr_updates
  • bugfix/mt_location
  • bugfix/multi_coredb_selection
  • bugfix/nonprinting_chars
  • bugfix/old_assembly_chr
  • bugfix/old_db_variation
  • bugfix/old_ontology_compara
  • bugfix/ont_advisory
  • bugfix/optimise_query
  • bugfix/plastid_annotation
  • bugfix/release-105-build-clone
  • bugfix/release-109-conflicts
  • bugfix/remove_skeletons
  • bugfix/remove_stable_id_check
  • bugfix/rename_dc_module
  • bugfix/rr_display_name_format
  • bugfix/schema_patch_sort
  • bugfix/seqlevel_toplevel
  • bugfix/seqregion_synonyms
  • bugfix/server_uri_exceptions
  • bugfix/shared_species
  • bugfix/skipping_in_collections
  • bugfix/species_common_name
  • bugfix/species_id
  • bugfix/sundry_fixes
  • bugfix/synonym_names
  • bugfix/test-update-plants
  • bugfix/test_databases
  • bugfix/test_dbs_and_obsolete_files
  • bugfix/transcript-support-operator
  • bugfix/transcript-support-operator-106
  • bugfix/travis_skip_tests
  • bugfix/typo-adivisory-report
  • bugfix/undef_adaptor_test
  • bugfix/variation
  • bugfix/variation_datachecks
  • bugfix/variation_fk
  • bugfix/xref_fixes
  • bugfix/xref_prefixes_group
  • bugfix/xref_types_critical
  • bugfixes/344-on-release-103
  • bugfixes/344-on-release-104
  • bugfixes/fix-query-check-previous-db
  • canonical_transcript_fix_projection
  • compara/cafe_dc
  • compara_datachecks
  • compara_projected_gene_name
  • compare_previous_version_projected_synonym
  • compare_previous_version_synonyms
  • convert_tap_json
  • copyright-2020
  • copyright-2021
  • datacheck_fixes
  • datacheck_for_description_newline
  • datachecks_for_Xref
  • dnadb_creation
  • duplicate_xref
  • email_notify
  • evidence_free_go
  • feature/CompareSpeciesAlias
  • feature/ENSPROD-7673_division_name_include_in_report
  • feature/ENSPROD_7736_disallow_species_strain_group
  • feature/ENSPROD_7736_disallow_species_strain_group_106
  • feature/add_core_sync_group
  • feature/advisory_dc
  • feature/amonida/dc
  • feature/analysis_and_attribs
  • feature/analysis_db_version
  • feature/ancestral_group
  • feature/ancestral_sequences_name
  • feature/assembly_geneset_change
  • feature/assembly_metakeys
  • feature/better_diag_message
  • feature/biomart_species_metazoa
  • feature/cactus_meta_consistency
  • feature/canonical_member_core
  • feature/ccds_xref
  • feature/check_unique_keys
  • feature/codon_migration
  • feature/collection_db_test
  • feature/collective_advisory_dc_report
  • feature/compara_datachecks
  • feature/compara_schema
  • feature/compare_variation
  • feature/config_file
  • feature/datacheck_groups
  • feature/dc_results_to_es
  • feature/dc_sequence_checksum
  • feature/dependency_module_es
  • feature/desc_group_tidy
  • feature/dupe_xref_advisory
  • feature/ena_format_gff3
  • feature/exon_rank_sequential
  • feature/extend_gene_stats
  • feature/filter_behaviour
  • feature/fix_conflicts
  • feature/fk_prod_db
  • feature/force_multi
  • feature/funcgen_datachecks
  • feature/gene_biotype_timeout
  • feature/gene_datachecks
  • feature/hook_update_index
  • feature/improve_test_coverage
  • feature/merge_102_to_master
  • feature/merge_103
  • feature/misc_tweaks
  • feature/more_meta_checks
  • feature/more_testing_of_tests
  • feature/multidb
  • feature/mvp
  • feature/mvp-rebase-main
  • feature/mvp_110
  • feature/ncbi_gene_name
  • feature/ncrna_canonic_member_core
  • feature/new_datachecks
  • feature/non_core_dc_pipeline
  • feature/old_dba
  • feature/pipeline_emails
  • feature/pipeline_fixes
  • feature/pipeline_script
  • feature/pipeline_xref_datacheck
  • feature/raise_fail_status
  • feature/remove_stable_id
  • feature/repo_release_versions
  • feature/sample_group
  • feature/sample_text_placeholder
  • feature/schema_datachecks
  • feature/server_uri
  • feature/split_appris_tsl
  • feature/statistics
  • feature/test_db_patch_107
  • feature/test_db_patch_108
  • feature/test_db_patch_109
  • feature/test_db_patch_110
  • feature/test_db_patch_111
  • feature/test_db_patch_112
  • feature/test_db_update
  • feature/test_update
  • feature/testcase_old_uri_array
  • feature/update_cpanfile
  • feature/update_datachecks
  • feature/update_group
  • feature/update_group_script
  • feature/update_test
  • feature/update_test_db
  • feature/updated_datachecks
  • feature/versioned_genes
  • feature/website_packed_status
  • feature/xref_datachecks
  • feature/xref_gene_symbol_transformer
  • features/ENSPROD-7978
  • features/allow-subspecies-for-plants
  • features/alphafold-logicname
  • features/codo-updates
  • features/ep-7119
  • features/ep-7140
  • features/es-no-port
  • features/long-running-dc-group
  • features/perl-5.26
  • features/slurm_112
  • fix/fan_funnel_dc
  • fix/genebuild_anno_metakey
  • fix/genebuild_anno_metakey1
  • fix/genebuild_anno_metakey2
  • fix/metadata-default-main
  • fix_index
  • fix_release_99
  • fix_synteny_sanity
  • fix_travis_slack_credentials
  • fix_view_problem
  • funcgen-dc-cleanup
  • funcgen_updates
  • gene_stable_id_display_xref
  • healthchecks_to_datachecks
  • hotfix/MetaKeyFormat
  • hotfix/check_mt_karyotype
  • hotfix/division_specific_repeatmasking
  • hotfix/gene-servionned-viruses
  • hotfix/repeat_nonvert
  • hotfix/repeatdetector_metakey
  • hotfix/repeatfeature
  • hotfix/repeatmasking_metakeys
  • hotfix/repeatmodeler_meta_key
  • hotfixes/viruses-division
  • jalvarez/mupport_gcf_main
  • jalvarez/support_gcf
  • luca-drf-display-name-format-regex
  • main
  • master
  • mbarba/brc_seqregions
  • mem_update
  • merge-conflicts-108-106
  • merge-release-110
  • merge/release/96
  • merge/release_104
  • merge_release_100
  • merge_release_98
  • merge_release_99
  • merge_release_99_master
  • new_datacheck/db_species_name
  • new_test/AltAllele
  • new_test/ExonRank
  • new_test/ExperimentHasFeatureSet
  • new_test/RegulatoryFeatureIsActive
  • new_test/SampleRegulatoryFeatureExists
  • new_test/SegmentationFileHasBigBed
  • new_test/exon_strand_order
  • new_test/exonsBoundaries
  • new_test/feature_position
  • non_core_dc_pipeline
  • one_karyotype_rank_dc
  • patch-1
  • predicted_xrefs
  • readme-dependencies
  • refseq_peptide_prefix_rw
  • release/100
  • release/101
  • release/102
  • release/103
  • release/104
  • release/105
  • release/106
  • release/107
  • release/108
  • release/109
  • release/110
  • release/111
  • release/96
  • release/97
  • release/98
  • release/99
  • revert-193-assembly_longer
  • revert-229-xref_prefix_fix
  • shared_display_xref
  • skip_human_polymorphic_pseudogenes
  • stable_id_display_xref
  • strain_type_dc
  • sundry_fixes
  • tap_to_json_bug
  • tmp
  • transcript_display_xref_suffix
  • transcript_same_name
  • transcript_same_name_99
  • uniprotkb_diplayxref_ids
  • unreviewed_xrefs
  • update/allow_blanks_core_meta
  • update/check_annotation_source
  • update/gene_biotypes_fix
  • update/gene_symbols_dc
  • update/skip_human_repeats
  • update_db_spec
  • update_test_db
  • update_tests_101
  • valid_display_name_fix
  • vsitnik-display_name_pat_108
  • vsitnik-fix-mt-only-chr
  • vsitnik-patch-1_prokka
  • vsitnik-patch-allowed_disp_name_pat_109
  • vsitnik-patch-allowed_dispnames_107
  • xref_desc_special_char
  • xref_html
  • xref_prefix_fix
  • xref_prefix_update
  • xref_prefixes

pending completion
1307

Pull #255

travis-ci

web-flow
Merge d0f9eb268 into b64c5c3e1
Pull Request #255: Added new module DataCheckTapToJson to convert datacheck tap output t…

1851 of 1929 relevant lines covered (95.96%)

22.26 hits per line

Relevant lines Covered
Build:
Build:
1929 RELEVANT LINES 1851 COVERED LINES
22.26 HITS PER LINE
Source Files on TapToJson
Detailed source file information is not available for this build.

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1307 TapToJson Merge d0f9eb268 into b64c5c3e1 Pull #255 22 Jul 2020 12:41PM UTC web-flow travis-ci pending completion  
1306 TapToJson Removing commented-out lines push 22 Jul 2020 12:41PM UTC james-monkeyshines travis-ci pending completion  
1305 TapToJson Merge 27b56768e into b64c5c3e1 Pull #255 22 Jul 2020 12:37PM UTC web-flow travis-ci pending completion  
1304 TapToJson Integrate tap-to-json output functionality into datacheck pipeline code. If the json output is not too large, attach it to notification emails. Use standaloneJob.pl in parse_results script to catch errors properly. push 22 Jul 2020 12:37PM UTC james-monkeyshines travis-ci pending completion  
1232 TapToJson parse_result.pl code move to DatacheckTapToJson module push 14 Jun 2020 05:44PM UTC vinay-ebi travis-ci pending completion  
1233 TapToJson Merge 7915339a6 into 43cd4cba8 Pull #255 14 Jun 2020 05:43PM UTC web-flow travis-ci pending completion  
1208 TapToJson Merge 494caeeb2 into 07e8ea8fd Pull #255 10 Jun 2020 02:19PM UTC web-flow travis-ci pending completion  
1207 TapToJson Added new module DataCheckTapToJson to convert datacheck tap output to json to display as html through datacheck service push 10 Jun 2020 01:58PM UTC vinay-ebi travis-ci pending completion  
See All Builds (1935)
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