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Ensembl / ensembl-datacheck
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LAST BUILD BRANCH: feature/ncrna_canonic_member_core
DEFAULT BRANCH: master
Repo Added 21 Aug 2018 03:18PM UTC
Files 30
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LAST BUILD ON BRANCH feature/add_core_sync_group
branch: feature/add_core_sync_group
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  • feature/add_core_sync_group
  • 110
  • Adaptive_memory_ENSPROD-4787
  • Compare_previous_version_go
  • DisplayName-with-commas-fix
  • DisplayName-with-commas-fix-release/105
  • DisplayNameFormat_update_105
  • DisplayNameFormat_update_106
  • DisplayNameFormat_update_107
  • DisplayNameFormat_update_main
  • ENSPROD-4980
  • EmailNotify
  • Simple_features_analysis_type
  • TapToJson
  • alphafold_datacheck
  • archive/master
  • attrib_value_update
  • bau/copyright-2022
  • bau/copyright-2023
  • bau/copyright-2024
  • biomart_dc
  • biomart_dc_fix
  • bug/fix_old_db_uri
  • bug/param_in_analysis
  • bug_fix/embedded_dc_output
  • bug_fix/skip_data_files
  • bug_fix/sundry_minor_fixes
  • bugfix/advisory_common_name
  • bugfix/ancestral_sequences_species_set
  • bugfix/assorted_fixes
  • bugfix/biomart_branch
  • bugfix/blank_sets
  • bugfix/catch_errors
  • bugfix/checksums_cds
  • bugfix/cmp_end
  • bugfix/compara-species-url
  • bugfix/compara_div_conditional
  • bugfix/config_flock
  • bugfix/controlledtables
  • bugfix/core_db_type
  • bugfix/core_stats_limit
  • bugfix/data-file-division-path
  • bugfix/db_name_format
  • bugfix/display_name_extra_character
  • bugfix/display_xref_exists
  • bugfix/elastic
  • bugfix/email_reports
  • bugfix/empty_output
  • bugfix/end_timestamp
  • bugfix/exon_bounds
  • bugfix/fk_multi_db
  • bugfix/gene_biotype_of
  • bugfix/genebuild_stable_id_prefix
  • bugfix/genebuild_start_date
  • bugfix/genebuild_version_integer
  • bugfix/go_xrefs
  • bugfix/homology_mlss
  • bugfix/insdc_rapid
  • bugfix/karyotype_chr_name
  • bugfix/lrgsequence-checksum
  • bugfix/merge-109
  • bugfix/metakey_url_format
  • bugfix/method_new_genebuild_metakeys
  • bugfix/method_new_genebuild_metakeys1
  • bugfix/misc
  • bugfix/missing_library
  • bugfix/motif_feature_file
  • bugfix/mt_chr_updates
  • bugfix/mt_location
  • bugfix/multi_coredb_selection
  • bugfix/nonprinting_chars
  • bugfix/old_assembly_chr
  • bugfix/old_db_variation
  • bugfix/old_ontology_compara
  • bugfix/ont_advisory
  • bugfix/optimise_query
  • bugfix/plastid_annotation
  • bugfix/release-105-build-clone
  • bugfix/release-109-conflicts
  • bugfix/remove_skeletons
  • bugfix/remove_stable_id_check
  • bugfix/rename_dc_module
  • bugfix/rr_display_name_format
  • bugfix/schema_patch_sort
  • bugfix/seqlevel_toplevel
  • bugfix/seqregion_synonyms
  • bugfix/server_uri_exceptions
  • bugfix/shared_species
  • bugfix/skipping_in_collections
  • bugfix/species_common_name
  • bugfix/species_id
  • bugfix/sundry_fixes
  • bugfix/synonym_names
  • bugfix/test-update-plants
  • bugfix/test_databases
  • bugfix/test_dbs_and_obsolete_files
  • bugfix/transcript-support-operator
  • bugfix/transcript-support-operator-106
  • bugfix/travis_skip_tests
  • bugfix/typo-adivisory-report
  • bugfix/undef_adaptor_test
  • bugfix/variation
  • bugfix/variation_datachecks
  • bugfix/variation_fk
  • bugfix/xref_fixes
  • bugfix/xref_prefixes_group
  • bugfix/xref_types_critical
  • bugfixes/344-on-release-103
  • bugfixes/344-on-release-104
  • bugfixes/fix-query-check-previous-db
  • canonical_transcript_fix_projection
  • compara/cafe_dc
  • compara_datachecks
  • compara_projected_gene_name
  • compare_previous_version_projected_synonym
  • compare_previous_version_synonyms
  • convert_tap_json
  • copyright-2020
  • copyright-2021
  • datacheck_fixes
  • datacheck_for_description_newline
  • datachecks_for_Xref
  • dnadb_creation
  • duplicate_xref
  • email_notify
  • evidence_free_go
  • feature/CompareSpeciesAlias
  • feature/ENSPROD-7673_division_name_include_in_report
  • feature/ENSPROD_7736_disallow_species_strain_group
  • feature/ENSPROD_7736_disallow_species_strain_group_106
  • feature/advisory_dc
  • feature/amonida/dc
  • feature/analysis_and_attribs
  • feature/analysis_db_version
  • feature/ancestral_group
  • feature/ancestral_sequences_name
  • feature/assembly_geneset_change
  • feature/assembly_metakeys
  • feature/better_diag_message
  • feature/biomart_species_metazoa
  • feature/cactus_meta_consistency
  • feature/canonical_member_core
  • feature/ccds_xref
  • feature/check_unique_keys
  • feature/codon_migration
  • feature/collection_db_test
  • feature/collective_advisory_dc_report
  • feature/compara_datachecks
  • feature/compara_schema
  • feature/compare_variation
  • feature/config_file
  • feature/datacheck_groups
  • feature/dc_results_to_es
  • feature/dc_sequence_checksum
  • feature/dependency_module_es
  • feature/desc_group_tidy
  • feature/dupe_xref_advisory
  • feature/ena_format_gff3
  • feature/exon_rank_sequential
  • feature/extend_gene_stats
  • feature/filter_behaviour
  • feature/fix_conflicts
  • feature/fk_prod_db
  • feature/force_multi
  • feature/funcgen_datachecks
  • feature/gene_biotype_timeout
  • feature/gene_datachecks
  • feature/hook_update_index
  • feature/improve_test_coverage
  • feature/merge_102_to_master
  • feature/merge_103
  • feature/misc_tweaks
  • feature/more_meta_checks
  • feature/more_testing_of_tests
  • feature/multidb
  • feature/mvp
  • feature/mvp-rebase-main
  • feature/mvp_110
  • feature/ncbi_gene_name
  • feature/ncrna_canonic_member_core
  • feature/new_datachecks
  • feature/non_core_dc_pipeline
  • feature/old_dba
  • feature/pipeline_emails
  • feature/pipeline_fixes
  • feature/pipeline_script
  • feature/pipeline_xref_datacheck
  • feature/raise_fail_status
  • feature/remove_stable_id
  • feature/repo_release_versions
  • feature/sample_group
  • feature/sample_text_placeholder
  • feature/schema_datachecks
  • feature/server_uri
  • feature/split_appris_tsl
  • feature/statistics
  • feature/test_db_patch_107
  • feature/test_db_patch_108
  • feature/test_db_patch_109
  • feature/test_db_patch_110
  • feature/test_db_patch_111
  • feature/test_db_patch_112
  • feature/test_db_update
  • feature/test_update
  • feature/testcase_old_uri_array
  • feature/update_cpanfile
  • feature/update_datachecks
  • feature/update_group
  • feature/update_group_script
  • feature/update_test
  • feature/update_test_db
  • feature/updated_datachecks
  • feature/versioned_genes
  • feature/website_packed_status
  • feature/xref_datachecks
  • feature/xref_gene_symbol_transformer
  • features/ENSPROD-7978
  • features/allow-subspecies-for-plants
  • features/alphafold-logicname
  • features/codo-updates
  • features/ep-7119
  • features/ep-7140
  • features/es-no-port
  • features/long-running-dc-group
  • features/perl-5.26
  • features/slurm_112
  • fix/fan_funnel_dc
  • fix/genebuild_anno_metakey
  • fix/genebuild_anno_metakey1
  • fix/genebuild_anno_metakey2
  • fix/metadata-default-main
  • fix_index
  • fix_release_99
  • fix_synteny_sanity
  • fix_travis_slack_credentials
  • fix_view_problem
  • funcgen-dc-cleanup
  • funcgen_updates
  • gene_stable_id_display_xref
  • healthchecks_to_datachecks
  • hotfix/MetaKeyFormat
  • hotfix/check_mt_karyotype
  • hotfix/division_specific_repeatmasking
  • hotfix/gene-servionned-viruses
  • hotfix/repeat_nonvert
  • hotfix/repeatdetector_metakey
  • hotfix/repeatfeature
  • hotfix/repeatmasking_metakeys
  • hotfix/repeatmodeler_meta_key
  • hotfixes/viruses-division
  • jalvarez/mupport_gcf_main
  • jalvarez/support_gcf
  • luca-drf-display-name-format-regex
  • main
  • master
  • mbarba/brc_seqregions
  • mem_update
  • merge-conflicts-108-106
  • merge-release-110
  • merge/release/96
  • merge/release_104
  • merge_release_100
  • merge_release_98
  • merge_release_99
  • merge_release_99_master
  • new_datacheck/db_species_name
  • new_test/AltAllele
  • new_test/ExonRank
  • new_test/ExperimentHasFeatureSet
  • new_test/RegulatoryFeatureIsActive
  • new_test/SampleRegulatoryFeatureExists
  • new_test/SegmentationFileHasBigBed
  • new_test/exon_strand_order
  • new_test/exonsBoundaries
  • new_test/feature_position
  • non_core_dc_pipeline
  • one_karyotype_rank_dc
  • patch-1
  • predicted_xrefs
  • readme-dependencies
  • refseq_peptide_prefix_rw
  • release/100
  • release/101
  • release/102
  • release/103
  • release/104
  • release/105
  • release/106
  • release/107
  • release/108
  • release/109
  • release/110
  • release/111
  • release/96
  • release/97
  • release/98
  • release/99
  • revert-193-assembly_longer
  • revert-229-xref_prefix_fix
  • shared_display_xref
  • skip_human_polymorphic_pseudogenes
  • stable_id_display_xref
  • strain_type_dc
  • sundry_fixes
  • tap_to_json_bug
  • tmp
  • transcript_display_xref_suffix
  • transcript_same_name
  • transcript_same_name_99
  • uniprotkb_diplayxref_ids
  • unreviewed_xrefs
  • update/allow_blanks_core_meta
  • update/check_annotation_source
  • update/gene_biotypes_fix
  • update/gene_symbols_dc
  • update/skip_human_repeats
  • update_db_spec
  • update_test_db
  • update_tests_101
  • valid_display_name_fix
  • vsitnik-display_name_pat_108
  • vsitnik-fix-mt-only-chr
  • vsitnik-patch-1_prokka
  • vsitnik-patch-allowed_disp_name_pat_109
  • vsitnik-patch-allowed_dispnames_107
  • xref_desc_special_char
  • xref_html
  • xref_prefix_fix
  • xref_prefix_update
  • xref_prefixes

pending completion
1425

push

travis-ci

james-monkeyshines
Check for json-ness of config file, report a useful debug message if we get an error.

1879 of 1960 relevant lines covered (95.87%)

22.53 hits per line

Relevant lines Covered
Build:
Build:
1960 RELEVANT LINES 1879 COVERED LINES
22.53 HITS PER LINE
Source Files on feature/add_core_sync_group
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  • Changed 1
  • Source Changed 1
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Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
1425 feature/add_core_sync_group Check for json-ness of config file, report a useful debug message if we get an error. push 10 Sep 2020 12:42PM UTC james-monkeyshines travis-ci pending completion  
1424 feature/add_core_sync_group Try to resolve failures due to file locking problems, by trapping any errors, and then giving it another go. Not very elegant, but should do the job... push 10 Sep 2020 12:33PM UTC james-monkeyshines travis-ci pending completion  
1422 feature/add_core_sync_group Datacheck pipeline only sends an email if there were databases of a particular type. push 09 Sep 2020 04:11PM UTC james-monkeyshines travis-ci pending completion  
1421 feature/add_core_sync_group Adding group for datachecks which check for synchronisation between core and non-core databases. push 09 Sep 2020 01:28PM UTC james-monkeyshines travis-ci pending completion  
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