ClinSeq / reportgen
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LAST BUILD ON BRANCH improve-testing
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Thomas Whitington 
Finishing up improving tests for the time being. Will instead now implement the CNV information inclusion, and will return to improving the testing and using Click later on.

384 of 595 relevant lines covered (64.54%)

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595 RELEVANT LINES 384 COVERED LINES
0.65 HITS PER LINE
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Builds Branch Commit Type Ran Committer Via Coverage
40 improve-testing Finishing up improving tests for the time being. Will instead now implement the CNV information inclusion, and will return to improving the testing and using Click later on. push Thomas Whitington travis-ci pending completion  
39 improve-testing Deleted a whole bunch of __eq__ and __ne__ methods, which I had originally introduced purely to facilitate "assertDictEqual" method calls in unit testing. My plan was to refactor testing to assert more specific statements, rather than comparing en... push Thomas Whitington travis-ci pending completion  
38 improve-testing Added more test conditions for methods of AlterationClassification. push Thomas Whitington travis-ci pending completion  
37 improve-testing Implemented some tests for metadata.py. Got a bit stumped when it comes to mocking the database correctly, but I think these tests are useful. push Thomas Whitington travis-ci pending completion  
36 improve-testing Deleted getter method that I don't know if I need yet. push Thomas Whitington travis-ci pending completion  
35 improve-testing Deleted ReportMetadata class since we no longer need it to contain any logic (since the latex generation is performed in the jinja2 template now). push Thomas Whitington travis-ci pending completion  
34 improve-testing Deleted DocumentFormat class and replaced with a simple dictionary. Deleted some getter methods from genomics too (not used). push Thomas Whitington travis-ci pending completion  
33 improve-testing Was using assertRaises incorrectly. push Thomas Whitington travis-ci pending completion  
31 improve-testing Refactoring tests: Adding new tests for the util module, and trying to use mocking correctly (in this case for the purpose of patching behaviour of excel spreadsheet parsing). push Thomas Whitington travis-ci pending completion  
21 improve-testing Added pip install coveralls statement. Hopefully this will get coveralls to work. push Thomas Whitington travis-ci pending completion  
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