hammerlab / guacamole / 2589
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Merge pull request #614 from ryan-williams/ssu

port to SBT, factor out more components, upgrade some deps

2197 of 2817 relevant lines covered (77.99%)

0.78 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
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 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
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 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticVAFFilter.scala
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 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
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 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
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 src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
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 src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
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 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
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 src/main/scala/org/hammerlab/guacamole/loci/partitioning/UniformPartitioner.scala
1
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 src/main/scala/org/hammerlab/guacamole/pileup/Pileup.scala
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 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageBaseQualityFilter.scala
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 src/main/scala/org/hammerlab/guacamole/variants/CalledAllele.scala
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 src/main/scala/org/hammerlab/guacamole/readsets/rdd/CoverageRDD.scala
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 src/main/scala/org/hammerlab/guacamole/commands/PartitionReads.scala
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 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
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 src/main/scala/org/hammerlab/guacamole/commands/PartitionLoci.scala
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 src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
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 src/main/scala/org/hammerlab/guacamole/commands/GermlineAssemblyCaller.scala
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 src/main/scala/org/hammerlab/guacamole/Main.scala
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 src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
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 src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
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 src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
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 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2589.1 0
77.99
 Travis Job 2589.1
Source Files on build 2589
Detailed source file information is not available for this build.