hammerlab / guacamole / 2586
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Ran
Jobs 1
Files 111
Run time 6s
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2586

Pull #614

travis-ci

web-flow 
fix kryo reg, factor out loci args
Pull Request #614: port to SBT, factor out more components, upgrade some deps

20 of 20 new or added lines in 9 files covered. (100.0%)

2197 of 2817 relevant lines covered (77.99%)

0.78 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
40.74
 -6.88% src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
1
29.51
 0.48% src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
2
12.9
 0.0% src/main/scala/org/hammerlab/guacamole/variants/Concordance.scala
7
85.33
 src/main/scala/org/hammerlab/guacamole/commands/SomaticStandardCaller.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
16.67
 -16.67% src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
1
89.87
 -1.27% src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
1
92.45
 -1.89% src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
92.59
 -3.7% src/main/scala/org/hammerlab/guacamole/loci/partitioning/UniformPartitioner.scala
1
75.0
 -25.0% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageBaseQualityFilter.scala
1
92.31
 -7.69% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
85.71
 -14.29% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
1
93.55
 -3.23% src/main/scala/org/hammerlab/guacamole/pileup/Pileup.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticVAFFilter.scala
1
96.52
 0.0% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
2
75.16
 0.62% src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
4
83.45
 -2.88% src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
5
60.0
 -2.5% src/main/scala/org/hammerlab/guacamole/commands/GermlineAssemblyCaller.scala
7
90.27
 -3.67% src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
12
40.74
 -6.88% src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
44
8.42
 -7.27% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
2 2586.2 111
77.99
 Travis Job 2586.2
Source Files on build 2586
Coverage ∆ File Lines Relevant Covered Missed Hits/Line