hammerlab / guacamole / 2581
78%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 114
Run time 6s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2581

Pull #613

travis-ci

web-flow 
factor out reference, loci packages
Pull Request #613: Factor out some reusable components to other repos

73 of 73 new or added lines in 15 files covered. (100.0%)

2177 of 2762 relevant lines covered (78.82%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/io/ReadFilterArgs.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/rdd/CoverageRDD.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/variants/AlleleEvidence.scala
5
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
7
100.0
 src/main/scala/org/hammerlab/guacamole/commands/GermlineAssemblyCaller.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/distributed/SingleContigRegionIterator.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticReadDepthFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/io/ReadFilterArgs.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/strings/TruncatedToString.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/rdd/PartitionedRegions.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/likelihood/Likelihood.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorDNASingleSampleSingleAlleleEvidence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorRNASingleSampleSingleAlleleEvidence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/distributed/RegionsByContig.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticLogOddsFilter.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAlternateReadDepthFilter.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMedianMismatchFilter.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
5
100.0
 src/main/scala/org/hammerlab/guacamole/variants/VariantContext.scala
6
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
9
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
20
100.0
 src/main/scala/org/hammerlab/guacamole/commands/GermlineAssemblyCaller.scala
Jobs
ID Job ID Ran Files Coverage
1 2581.1 0
78.82
 Travis Job 2581.1
Source Files on build 2581
Detailed source file information is not available for this build.