hammerlab / guacamole / 2579
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Files 134
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Merge pull request #600 from ryan-williams/agp

fold AffineGapPenaltyAlignment into ReadAlignment

58 of 58 new or added lines in 4 files covered. (100.0%)

2474 of 3113 relevant lines covered (79.47%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
100.0
 src/main/scala/org/hammerlab/guacamole/assembly/AssemblyUtils.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/loci/set/Builder.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/pileup/Pileup.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageBaseQualityFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticLogOddsFilter.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
10
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
Jobs
ID Job ID Ran Files Coverage
1 2579.1 0
79.47
 Travis Job 2579.1
Source Files on build 2579
Detailed source file information is not available for this build.