hammerlab / survivalstan / 142
85%
master: 85%

LAST BUILD BRANCH: feature/royston-parmar
DEFAULT BRANCH: master
Ran
Jobs 20
Files 5
Run time 30min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
142

push

travis-ci

web-flow 
Add travis tests (#23)

* add FIT_FUN to modify stanity.fit; add file so code is optional

* pass file explicitly to FIT_FUN

* modify .travis.yml to run long-running tests

* separate requirements from test_requirements

* first attempt

* update tests & split into multiple files

* updated documentation

* use correlated data for test cases

* clean up test code

* fix repeated seed bug

* fix bug

* ignore model cache

* use ./wait4.sh code

* require upgrade to pystan 2.12.0

* echo stdout before exit, in wait4

* make tests less verbose unless they fail

* fix wait4.sh to take all parameters

* simplify memory reqs for tests

* remove wait4.sh pre-command

* fix wait4.sh script

* restore wait4.sh command

* split up tests

* split tests into separate builds; try caching models

* make sure wait4.sh prints output; skip tests for now just test wait4.sh

* limit number of tests

* update travis to use bash

* simplify final exit

* remove cached_models from travis-cache; remove cache-only option

* restore options to other tests

* increase num iter

* use AGG backend for figs

* restore all tests using AGG; increase iter on all tests

* return to using stancache; reduce iter; reduce number of models

* reformat cache

* rename baseline_raw -> baseline

* split test files in half for more efficient run time

* remove unused file

* fix error in test code

* add sample size param for test dataset size

* restore travis tests for py3

* rename baseline_raw -> baseline for consistency

* include varcoefs in test code

* add tvc model to tests

* try to fix syntax error

* actually fix group_col param

* update varcoef model to latest code

* change baseline_raw -> baseline for consistency

239 of 391 relevant lines covered (61.13%)

9.11 hits per line

Jobs
ID Job ID Ran Files Coverage
1 142.1 (TEST=test/test_exp_survival_model.py) 0
33.25
 Travis Job 142.1
2 142.2 (TEST=test/test_exp_survival_model_sim.py) 0
35.29
 Travis Job 142.2
3 142.3 (TEST=test/test_pem_survival_model.py) 0
50.13
 Travis Job 142.3
4 142.4 (TEST=test/test_pem_survival_model_sim.py) 0
50.13
 Travis Job 142.4
5 142.5 (TEST=test/test_weibull_survival_model.py) 0
34.53
 Travis Job 142.5
6 142.6 (TEST=test/test_weibull_survival_model_sim.py) 0
36.57
 Travis Job 142.6
7 142.7 (TEST=test/test_pem_survival_model_varcoefs.py) 0
58.31
 Travis Job 142.7
8 142.8 (TEST=test/test_pem_survival_model_varcoefs_sim.py) 0
58.31
 Travis Job 142.8
9 142.9 (TEST=test/test_pem_survival_model_timevarying.py) 0
50.13
 Travis Job 142.9
10 142.10 (TEST=test/test_pem_survival_model_timevarying_sim.py) 0
50.13
 Travis Job 142.10
11 142.11 (TEST=test/test_exp_survival_model.py) 0
32.99
 Travis Job 142.11
12 142.12 (TEST=test/test_exp_survival_model_sim.py) 0
35.04
 Travis Job 142.12
13 142.13 (TEST=test/test_pem_survival_model.py) 0
49.87
 Travis Job 142.13
14 142.14 (TEST=test/test_pem_survival_model_sim.py) 0
49.87
 Travis Job 142.14
15 142.15 (TEST=test/test_weibull_survival_model.py) 0
34.27
 Travis Job 142.15
16 142.16 (TEST=test/test_weibull_survival_model_sim.py) 0
36.32
 Travis Job 142.16
17 142.17 (TEST=test/test_pem_survival_model_varcoefs.py) 0
58.06
 Travis Job 142.17
18 142.18 (TEST=test/test_pem_survival_model_varcoefs_sim.py) 0
58.06
 Travis Job 142.18
19 142.19 (TEST=test/test_pem_survival_model_timevarying.py) 0
49.87
 Travis Job 142.19
20 142.20 (TEST=test/test_pem_survival_model_timevarying_sim.py) 0
49.87
 Travis Job 142.20
Source Files on build 142
Detailed source file information is not available for this build.