hammerlab / guacamole / 2575
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Jobs 1
Files 132
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2575

Pull #612

travis-ci

web-flow 
add sensible default filters and update tests
Pull Request #612: Upgrades and default settings to SomaticStandard

26 of 26 new or added lines in 6 files covered. (100.0%)

2408 of 3055 relevant lines covered (78.82%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/likelihood/Likelihood.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/reference/Interval.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/variants/Allele.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/rdd/PartitionedRegions.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/readsets/io/ReadFilterArgs.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/loci/set/Builder.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMedianMismatchFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAlternateReadDepthFilter.scala
1
100.0
 src/main/scala/org/hammerlab/guacamole/distributed/SingleContigRegionIterator.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
2
100.0
 src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
3
100.0
 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticLogOddsFilter.scala
12
100.0
 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2575.1 0
78.82
 Travis Job 2575.1
Source Files on build 2575
Detailed source file information is not available for this build.