hammerlab / guacamole / 2575
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Ran
Jobs 1
Files 132
Run time 7s
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2575

Pull #612

travis-ci

web-flow 
add sensible default filters and update tests
Pull Request #612: Upgrades and default settings to SomaticStandard

26 of 26 new or added lines in 6 files covered. (100.0%)

2408 of 3055 relevant lines covered (78.82%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
79.17
 -9.72% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
1
97.56
 -2.44% src/main/scala/org/hammerlab/guacamole/likelihood/Likelihood.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
92.31
 -7.69% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
92.45
 -1.89% src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
1
62.5
 -6.25% src/main/scala/org/hammerlab/guacamole/reference/Interval.scala
1
87.5
 0.83% src/main/scala/org/hammerlab/guacamole/variants/Allele.scala
1
45.28
 -1.89% src/main/scala/org/hammerlab/guacamole/readsets/rdd/PartitionedRegions.scala
1
92.86
 0.0% src/main/scala/org/hammerlab/guacamole/readsets/io/ReadFilterArgs.scala
1
91.14
 0.0% src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
1
75.0
 -25.0% src/main/scala/org/hammerlab/guacamole/loci/set/Builder.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMedianMismatchFilter.scala
1
33.33
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAlternateReadDepthFilter.scala
1
50.0
 -50.0% src/main/scala/org/hammerlab/guacamole/distributed/SingleContigRegionIterator.scala
2
29.03
 -3.23% src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
2
94.78
 -1.74% src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/MultiSampleSingleAlleleEvidence.scala
2
0.0
 -66.67% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMinimumLikelihoodFilter.scala
2
82.14
 0.0% src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
3
16.67
 -50.0% src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
3
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
3
72.67
 -1.24% src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
79.17
 -9.72% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
3
0.0
 -100.0% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticLogOddsFilter.scala
12
52.63
 8.31% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2575.1 132
78.82
 Travis Job 2575.1
Source Files on build 2575
Coverage ∆ File Lines Relevant Covered Missed Hits/Line