dnanexus-rnd / GLnexus / 1415

93%

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travis-ci

genotyper: re-call genotypes involving lost alleles (#95)

Use genotype likelihoods and allele frequencies to re-call genotypes at input sites which include alleles "lost" in the unification (usually due to missing quality thresholds). Often these low-quality calls "round down" to 0/0, thus reducing no-calls in the output due to noisy, low-quality calls.

177 of 177 new or added lines in 5 files covered. (100.0%)

3216 of 3434 relevant lines covered (93.65%)

266269.23 hits per line