clintval / chaff / 38252606330

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fix!: count agreeing reads per strand and write every stratum's metrics (#14)

* fix!: count agreeing reads per strand and write every stratum's metrics

* fix: profile the library for the metrics without a copied-damage call

* fix: treat the strand error tags as a pair and count fallbacks

* fix: wait for the library profile only for a copied-damage call or the metrics

* fix: give a damage class of A or T lesions no CpG stratum

* docs: say when the metrics leave the artifact fractions empty

96 of 97 new or added lines in 4 files covered. (98.97%)

2322 of 2394 relevant lines covered (96.99%)

383498.01 hits per line