CBIIT / CCDI-Integrated-Backend / 35139557455

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Merge 2.0.0 into main (#83)

* update group count helper to resolve widget issues

* use study_participants_faceted table for facet filters

* use participant end point for study facet filters

* remove additional updates from study facet filters

* Wrote initial query and some update queries for the participants_table index

* Added tentative update query for radiation treatments

* Fixed treatment filters by combining them into one update query with UNION

* Changed UNION ALL to UNION to deduplicate participants' treatment filters

* Added treatment_surgery filters to participants_table

* Added treatment_other filters to participants_table

* Added treatment_response filters to participants_table

* Added first 10 types of sample_diagnosis_genetic_analysis_file_filters to participants_table

* Added 30 more types of sample_diagnosis_genetic_analysis_file_filters to participants_table and flattened the nested objects in that list of filters.

* Fixed participants_table saving only one treatment response per participant in treatment_response_filters

* Added 10 more types of sample_diagnosis_genetic_analysis_file_filters to partcipants_table

* Fixed issue where participants_table saves only one survival record per participant

* Fixed issue with participants_table where treatment_filters only saved one of each type of treatment per participant

* Added last 10 types of sample_diagnosis_genetic_analysis_file_filters to participants_table

* Removed coalesce() from properties that are now lists in the database

* Replaced a bunch of collect() uses with count()

* Added files update query for participants_table index

* Edited the end of the sample_genetic_analysis_file_filters query in participants_table to remove duplicate filters

* Update the sample_genetic_analysis_file_filters query with cleaner logic

* Fixed sample_genetic_analysis_file_filters update query for participants_table to include filters when participant has no samples or files

* st... (continued)

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