hammerlab / guacamole / 2503
78%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 130
Run time 7s
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2503

Pull #603

travis-ci

web-flow 
partition-loci cmd
Pull Request #603: add `partition-loci` cmd

8 of 8 new or added lines in 3 files covered. (100.0%)

2379 of 3014 relevant lines covered (78.93%)

0.79 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
0.0
 0.0% src/main/scala/org/hammerlab/guacamole/Main.scala
2
0.0
 src/main/scala/org/hammerlab/guacamole/loci/partitioning/HalfWindowArgs.scala
4
0.0
 src/main/scala/org/hammerlab/guacamole/commands/PartitionLoci.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
85.61
 -0.72% src/main/scala/org/hammerlab/guacamole/assembly/DeBruijnGraph.scala
1
85.71
 0.0% src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
1
70.0
 -10.0% src/main/scala/org/hammerlab/guacamole/distributed/RegionsByContig.scala
1
75.0
 -25.0% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticAverageBaseQualityFilter.scala
1
80.0
 -20.0% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticReadDepthFilter.scala
1
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticMedianMismatchFilter.scala
1
92.31
 -7.69% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/InsufficientNormal.scala
1
94.34
 -1.89% src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
2
74.53
 1.24% src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
3
66.67
 -33.33% src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/SingleSampleAnnotations.scala
10
49.28
 -0.48% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2503.1 130
78.93
 Travis Job 2503.1
Source Files on build 2503
Coverage ∆ File Lines Relevant Covered Missed Hits/Line