Project-OSmOSE / OSEkit / 30247094622

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APLOSE detections (#400)

* add the osekit.core.annotation.Annotation class

* add Annotation deserialization from csv

* move comments and phase to the AnnotationMetadata class

* filter na in annotation read_csv()

* add FrequencyBounds post_init validity check

* add FrequencyBounds tests

* parse missing cell values as None

* remove analysis column from result csv

* fix docstring parameter name

* add AnnotatorInfo hash() method

* add AnnotatorInfo hash test

* add default None value for SignalParameters parameters

* add ConfidenceIndicator level parsing in post_init()

* clarify ConfidenceIndicator parameters

* add ConfidenceIndicator post_init() tests

* add ConfidenceIndicator.from_relative_level_string() test

* reverse index to the correct row name

* add annotation from csv integration test

* fix relative path to sample csv file in tests

* add Annotation.to_rectangle() method

* add None parameter in localize_timestamp

* add Event.localize() method

* pass kwargs through Annotation.to_rectangle()

* make SpetroData.plot() return the Axes on which the spetro has been plotted

* add Annotation.__repr__() test

* add sample Annotation fixture

* add Annotation.to_rectangle() test

* rename AnnotatorInfo fields

* add aplose resutlts entry in doc

* complete annotation results file

* add APLOSE results notebook

* add aplose notebook in toctree

* fix cell order

* rename annotation as detection

* add aplose doc entry

* make confidence indicator optionnal

* rename test_annotation as test_detection

* make most detection fields optional

* set unspecified parameters from csv to None

* add minimal detector result csv file

* fix optional and required columns in detections results csv files

* set detection.to_rectangle() Ãfill parameter to False by default

* allow list of csv files as Detection.from_csv() parameter

* add APLOSE_COLORS dict and cycle helper function

* add default Detection __repr__() if no metadata.detection_id prop... (continued)

232 of 232 new or added lines in 9 files covered. (100.0%)

5535 of 5590 relevant lines covered (99.02%)

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