pirl-unc / tcrsift / 28811903208

Build # 28811903208

Build Type

push

github

Committed by web-flow

Commit Message

3.3.0: AnnData atlas plots — UMAP, provenance, signature-vs-background, raincloud (#323)

First AnnData-input plots.py members over the single-cell atlas (embed → annotate): plot_umap (categorical phenotype/leiden + continuous signature/gene), plot_provenance (subset over grey bg, by=antigen), plot_signature_vs_background (per-lineage boxes + subset dots), plot_raincloud (half-violin + dots + median/IQR). Reuse save_figure/pretty_antigen. cmd_run emits phenotype+leiden atlas UMAPs. Closes #308, #315.

Coverage Stats

12551 of 14796 relevant lines covered (84.83%)

0.85 hits per line

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