stacklok / toolhive / 28637457627
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coverage: 67.589% (-0.06%) from 67.646%
28637457627

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Fix documentation link rot across the repo (#5711)

* Fix documentation link rot across the repo

A doc-graph scan found 70 broken links/anchors (18 broken links,
52 broken anchors) plus real documentation disconnected from the
navigation surface. All errors are fixed; the graph now passes
matlatl check with zero broken links and zero broken anchors.

CRD API reference (docs/operator/crd-api.md, generated):
- Added +gendoc markers to types referenced in field tables but
  never rendered as headings: vmcp.config.Duration, pkg.json.Map,
  pkg.json.Any, pkg.vmcp.ConflictResolutionStrategy,
  pkg.vmcp.DiscoveredBackend, api.v1beta1.DiscoveredBackend (alias),
  api.v1beta1.PermissionProfileSpec
- Added +groupName/+versionName to pkg/vmcp/doc.go and new
  pkg/json/doc.go so crd-ref-docs discovers these packages as
  group-versions and renders their +gendoc-marked types
- Updated type.tpl: +gendoc-marked types now bypass the
  markdownShouldRenderType gate (so unreferenced helper types get
  headings); types with a GVK (deprecated v1alpha1 resources) render
  regardless of package; the Underlying type line uses the type name
  instead of a broken local link
- Regenerated crd-api.md — all 53 broken anchors resolved

Stale proposal links (RFCs moved to toolhive-rfcs repo):
- THV-2106-virtual-mcp-server.md → THV-0008 (external GitHub link)
- otel-integration-proposal.md → THV-0001 (external GitHub link)
- Updated cmd/vmcp/README.md, docs/observability.md,
  docs/operator/virtualmcpcompositetooldefinition-guide.md,
  docs/operator/virtualmcpserver-api.md, examples/vmcp-config.yaml,
  pkg/vmcp/doc.go

Moved source file:
- pkg/runner/remote_auth.go → pkg/auth/remote/handler.go
  (moved in commit dbeef088); updated docs/remote-mcp-authentication.md

Missing/wrong targets:
- docs/observability.md: wrong relative path for otel example
- docs/operator/virtualmcpserver-api.md: links to non-existent
  per-resource API docs now point to crd-api.md anchors
- docs/operator... (continued)

71249 of 105415 relevant lines covered (67.59%)

65.13 hits per line

Coverage Regressions

Lines Coverage ∆ File
63
62.12
 -5.09% pkg/workloads/manager.go
5
0.0
 -100.0% pkg/workloads/sysproc_unix.go
3
71.85
 -1.11% pkg/ignore/processor.go
2
96.03
 0.0% pkg/authserver/storage/memory.go
2
94.77
 -1.31% pkg/vmcp/composer/dag_executor.go
Jobs
ID Job ID Ran Files Coverage
1 28637457627.1 779
67.59
 GitHub Action Run
Source Files on build 28637457627