bihealth / snappy-pipeline / 28234298528
85%
master: 89%

LAST BUILD BRANCH: main
DEFAULT BRANCH: master
Ran
Jobs 2
Files 140
Run time 1min
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coverage: 85.22% (+0.8%) from 84.401%
28234298528

Pull #495

github

web-flow 
Merge f91a058d7 into 904647f6c
Pull Request #495: feat: Adding somatic neoepitope preparation workflow

2083 of 2337 new or added lines in 35 files covered. (89.13%)

1 existing line in 1 file now uncovered.

11751 of 13789 relevant lines covered (85.22%)

1.7 hits per line

Uncovered Changes

Lines Coverage ∆ File
66
90.27
 snappy_pipeline/workflows/somatic_neoepitope_prediction/__init__.py
38
80.61
 snappy_pipeline/workflows/any_variant_filtration/__init__.py
29
84.49
 snappy_pipeline/workflows/any_variant_annotation/__init__.py
21
77.66
 snappy_pipeline/workflows/any_variant_filtration/model.py
18
94.43
 snappy_pipeline/workflows/somatic_neoepitope_prediction/model.py
16
86.32
 snappy_pipeline/workflows/combine_variants/__init__.py
16
90.13
 -4.76% snappy_pipeline/workflows/hla_typing/__init__.py
11
80.0
 snappy_pipeline/workflows/combine_variants/model.py
11
79.63
 snappy_pipeline/workflows/common/samplesheet.py
11
88.04
 snappy_pipeline/workflows/create_proteome/__init__.py
7
86.54
 snappy_pipeline/workflows/any_variant_calling/__init__.py
3
81.25
 snappy_pipeline/models/common.py
2
96.97
 -3.03% snappy_pipeline/models/annotation.py
1
96.15
 snappy_pipeline/workflows/any_variant_annotation/model.py
1
95.83
 0.01% snappy_pipeline/workflows/cbioportal_export/__init__.py
1
98.99
 snappy_pipeline/workflows/germline_variant_calling/__init__.py
1
98.59
 -1.41% snappy_pipeline/workflows/hla_typing/model.py
1
73.85
 -10.64% snappy_pipeline/workflows/somatic_variant_filtration/__init__.py

Coverage Regressions

Lines Coverage ∆ File
1
73.85
 -10.64% snappy_pipeline/workflows/somatic_variant_filtration/__init__.py
Jobs
ID Job ID Ran Files Coverage
1 28234298528.1 140
85.22
2 28234298528.2 140
85.22
Source Files on build 28234298528